Skip to main content
. 2018 Jul 16;9:1581. doi: 10.3389/fmicb.2018.01581

Table 2.

Assembled transcript statistics arising from RNA-seq reads generated from four species of anaerobic fungi.

Species Contig count Total length Median contig length L50* ORFs per contig Median ORF length AT %
1····· 2 3
Anaeromyces mucronatus 8,450 13,224,613 1,309 1,897 8,448 170 9 1,182 72.2
Neocallimastix frontalis 12,751 16,330,830 1,087 1,539 12,750 152 13 979 70.3
Orpinomyces joyonii 6,633 10,602,950 1,365 1933 6,564 66 3 1,227 71.6
Piromyces rhizinflata 12,160 19,564,255 1,310 2,005 11,955 197 7 1167 72.8
*

50% of the assembled bases were in contigs of this length or longer.

Only ORFs of 210 bases or longer were counted.