Table 1.
Gene pool | Species | Samplea | Plex | Total reads | Aligned reads (%) | Single alignment (%) | Multiple alignment (%) | Uniquely mapped (%) | Multi mapped (%) |
---|---|---|---|---|---|---|---|---|---|
1° | L. culinaris | CDC Redberry 1 | 12 | 13,567,183 | 95.07 | 32.29 | 62.78 | 67.92 | 27.15 |
1° | L. culinaris | Indianhead 1 | 12 | 16,851,211 | 96.61 | 35.30 | 61.31 | 68.18 | 28.43 |
1° | L. culinaris | PI 178952 2 | 12 | 15,522,254 | 96.96 | 43.80 | 53.16 | 67.97 | 28.30 |
1° | L. culinaris | PI 299165 2 | 12 | 20,753,869 | 97.37 | 43.52 | 53.84 | 68.64 | 28.73 |
1° | L. culinaris | PI 468901 2 | 12 | 15,849,844 | 97.62 | 45.35 | 52.28 | 70.30 | 27.32 |
1° | L. culinaris | Shasta 1 | 12 | 12,691,222 | 95.01 | 28.87 | 66.15 | 63.05 | 31.96 |
1° | L. orientalis | BGE 016880 3 | 12 | 12,717,811 | 85.40 | 30.06 | 55.34 | 55.51 | 29.89 |
1° | L. orientalis | IG 72534 4 | 12 | 17,345,990 | 95.83 | 37.89 | 57.94 | 62.62 | 33.21 |
1° | L. orientalis | IG 72611 4 | 12 | 15,505,204 | 95.08 | 37.56 | 57.52 | 61.39 | 33.69 |
1° | L. tomentosus | IG 72614 4 | 12 | 21,754,287 | 93.55 | 35.87 | 57.68 | 56.73 | 36.83 |
1° | L. tomentosus | IG 72805 4 | 12 | 19,156,322 | 93.40 | 36.07 | 57.33 | 56.84 | 36.56 |
2° | L. odemensis | IG 72623 4 | 12 | 18,055,204 | 92.10 | 36.36 | 55.74 | 53.68 | 38.42 |
2° | L. odemensis | IG 72760 4 | 12 | 11,558,633 | 91.37 | 36.80 | 54.57 | 53.44 | 37.93 |
2° | L. lamottei | IG 110810 4 | 12 | 14,957,568 | 92.17 | 39.07 | 53.11 | 55.61 | 36.56 |
2° | L. lamottei | IG 110813 4 | 12 | 12,250,277 | 91.98 | 39.88 | 52.10 | 55.76 | 36.22 |
2° | L. lamottei | IG 72552 4 | 12 | 13,215,242 | 92.03 | 40.68 | 51.34 | 56.33 | 35.69 |
2° | L. lamottei | ILWL 29 4 | 12 | 14,065,720 | 88.78 | 30.81 | 57.97 | 50.08 | 38.70 |
3° | L. ervoides | IG 136620 4 | 12 | 14,905,955 | 92.13 | 38.64 | 53.48 | 54.54 | 37.59 |
3° | L. ervoides | IG 72815 4 | 12 | 17,179,746 | 91.92 | 38.24 | 53.68 | 54.17 | 37.75 |
3° | L. ervoides | L01‐827A 1 | 12 | 11,778,036 | 86.38 | 32.17 | 54.21 | 49.64 | 36.74 |
1° | L. culinaris | CN 105895 5 | 6 | 62,071,291 | 96.11 | 38.09 | 58.01 | 60.34 | 35.77 |
1° | L. culinaris | IG 1959 4 | 6 | 43,151,121 | 96.35 | 37.69 | 58.66 | 60.39 | 35.96 |
1° | L. culinaris | ILL 213 | 6 | 37,185,226 | 96.70 | 38.26 | 58.44 | 60.44 | 36.27 |
1° | L. culinaris | ILL 2507 4 | 6 | 42,707,717 | 96.58 | 36.09 | 60.50 | 59.58 | 37.00 |
1° | L. culinaris | ILL 4609 4 | 6 | 21,980,355 | 96.43 | 35.63 | 60.80 | 59.28 | 37.15 |
1° | L. culinaris | ILL 5722 4 | 6 | 41,432,535 | 97.39 | 38.51 | 58.88 | 62.72 | 34.66 |
1° | L. culinaris | ILL 7663 4 | 6 | 34,608,074 | 96.61 | 36.00 | 60.61 | 60.47 | 36.14 |
1° | L. culinaris | ILL 8007 4 | 6 | 27,894,290 | 96.66 | 36.74 | 59.92 | 59.58 | 37.08 |
1° | L. culinaris | ILL 9 4 | 6 | 57,429,161 | 96.93 | 38.53 | 58.40 | 61.79 | 35.15 |
1° | L. culinaris | PI 209858 2 | 6 | 69,589,951 | 96.53 | 35.95 | 60.58 | 59.95 | 36.58 |
1° | L. culinaris | PI 297285 LSP 2 | 6 | 41,070,927 | 97.06 | 37.30 | 59.76 | 63.03 | 34.03 |
1° | L. culinaris | PI 370481 LSP 2 | 6 | 52,612,438 | 96.89 | 36.39 | 60.50 | 61.13 | 35.75 |
1° | L. culinaris | PI 374118 2 | 6 | 34,753,926 | 96.82 | 36.48 | 60.33 | 60.92 | 35.89 |
1° | L. culinaris | PI 431710 2 | 6 | 38,337,889 | 96.37 | 36.24 | 60.13 | 59.41 | 36.97 |
1° | L. culinaris | PI 432245 LSP 2 | 6 | 33,097,715 | 97.02 | 37.26 | 59.77 | 61.90 | 35.12 |
1° | L. culinaris | PI 533693 LSP 2 | 6 | 47,350,007 | 97.42 | 35.42 | 62.00 | 61.92 | 35.50 |
4° | L. nigricans | IG 72539 4 | 6 | 19,064,179 | 73.95 | 28.42 | 45.53 | 41.34 | 32.62 |
4° | L. nigricans | IG 72541 4 | 6 | 12,618,403 | 69.80 | 24.87 | 44.94 | 37.67 | 32.14 |
Seed sources: 1 = Crop Development Centre, University of Saskatchewan, Saskatoon, Saskatchewan, Canada; 2 = USDA‐ARS Western Plant Introduction Station, Pullman, Washington, USA; 3 = Universidad de León, León, Spain; 4 = International Centre for Agricultural Research in the Dry Areas (ICARDA), Rabat, Morocco; 5 = Plant Gene Resources of Canada (PGRC), Saskatoon, Saskatchewan, Canada.