Table 2.
Summary of the regions represented in the exome capture for the Lens samples used in the study
| Speciesa | Sample | Median depth across target regions | <400 bp outside probe regions (%) | <200 bp outside probe regions (%) | <100 bp outside probe regions (%) | mRNA (%) | Exons (%) | Introns (%) | UTR (%) |
|---|---|---|---|---|---|---|---|---|---|
| cul | CDC Redberry | 10.36 | 67.88 | 66.64 | 65.27 | 62.45 | 41.69 | 20.76 | 9.25% |
| cul | CN 105895 | 35.70 | 76.17 | 75.07 | 73.50 | 71.03 | 47.97 | 23.06 | 10.49 |
| cul | IG 1959 | 25.77 | 76.64 | 75.52 | 73.97 | 71.36 | 48.12 | 23.24 | 10.67 |
| cul | ILL 213 | 19.89 | 75.75 | 74.69 | 73.45 | 70.72 | 48.51 | 22.21 | 10.55 |
| cul | ILL 2507 | 25.12 | 68.70 | 67.53 | 66.20 | 63.64 | 42.59 | 21.05 | 9.60 |
| cul | ILL 4609 | 4.77 | 75.53 | 74.47 | 73.25 | 70.46 | 48.10 | 22.37 | 10.58 |
| cul | ILL 5722 | 13.01 | 78.87 | 77.81 | 76.31 | 73.14 | 49.48 | 23.66 | 11.02 |
| cul | ILL 7663 | 22.79 | 73.50 | 72.35 | 70.97 | 68.41 | 46.39 | 22.02 | 10.16 |
| cul | ILL 8007 | 20.97 | 78.81 | 77.83 | 76.61 | 73.47 | 50.29 | 23.18 | 11.17 |
| cul | ILL 9 | 14.61 | 77.87 | 76.81 | 75.28 | 72.51 | 48.98 | 23.53 | 10.86 |
| cul | Indianhead | 12.91 | 72.57 | 71.48 | 70.27 | 67.56 | 46.08 | 21.48 | 10.03 |
| cul | PI 178952 | 26.34 | 87.45 | 86.83 | 85.97 | 82.76 | 59.37 | 23.39 | 12.12 |
| cul | PI 209858 | 29.18 | 72.93 | 71.86 | 70.56 | 68.32 | 46.52 | 21.80 | 10.18 |
| cul | PI 297285 LSP | 24.24 | 73.99 | 72.83 | 71.28 | 68.69 | 46.31 | 22.38 | 10.14 |
| cul | PI 299165 | 16.50 | 86.50 | 85.88 | 85.04 | 82.24 | 59.52 | 22.72 | 11.46 |
| cul | PI 370481 LSP | 32.77 | 73.08 | 72.01 | 70.64 | 68.18 | 46.21 | 21.97 | 10.14 |
| cul | PI 374118 | 21.76 | 73.84 | 72.75 | 71.31 | 68.81 | 46.62 | 22.18 | 10.06 |
| cul | PI 431710 | 23.08 | 74.46 | 73.37 | 71.92 | 69.61 | 47.21 | 22.40 | 10.11 |
| cul | PI 432245 LSP | 21.23 | 75.86 | 74.77 | 73.38 | 70.59 | 48.05 | 22.54 | 10.48 |
| cul | PI 468901 | 15.09 | 87.45 | 86.77 | 85.67 | 82.38 | 58.32 | 24.06 | 12.07 |
| cul | PI 533693 LSP | 29.44 | 72.08 | 71.00 | 69.71 | 67.19 | 45.63 | 21.56 | 9.85 |
| cul | Shasta | 18.53 | 65.39 | 64.25 | 63.13 | 61.83 | 43.48 | 18.35 | 7.69 |
| ori | BGE016880 | 4.17 | 70.08 | 68.77 | 67.09 | 64.87 | 43.40 | 21.47 | 9.66 |
| ori | IG 72534 | 15.17 | 80.39 | 79.46 | 78.09 | 75.07 | 51.41 | 23.66 | 11.28 |
| ori | IG 72611 | 13.29 | 81.52 | 80.57 | 79.19 | 76.17 | 52.17 | 24.01 | 11.51 |
| tom | IG 72614 | 17.14 | 81.96 | 81.07 | 79.79 | 77.14 | 53.23 | 23.91 | 11.76 |
| tom | IG 72805 | 14.98 | 82.62 | 81.71 | 80.44 | 77.82 | 53.79 | 24.03 | 11.82 |
| ode | IG 72623 | 14.12 | 85.11 | 84.40 | 83.47 | 81.43 | 57.40 | 24.03 | 12.44 |
| ode | IG 72760 | 8.63 | 85.54 | 84.78 | 83.62 | 81.51 | 56.88 | 24.63 | 12.55 |
| lam | IG 110810 | 12.44 | 86.05 | 85.45 | 84.59 | 82.49 | 57.99 | 24.51 | 12.79 |
| lam | IG 110813 | 10.06 | 86.91 | 86.27 | 85.20 | 83.17 | 57.88 | 25.29 | 12.79 |
| lam | IG 72552 | 10.85 | 87.15 | 86.50 | 85.35 | 83.53 | 58.05 | 25.48 | 12.76 |
| lam | ILWL 29 | 9.03 | 74.66 | 73.79 | 72.72 | 71.23 | 48.38 | 22.85 | 10.95 |
| erv | IG 136620 | 11.98 | 87.22 | 86.55 | 85.50 | 83.51 | 58.48 | 25.03 | 12.73 |
| erv | IG 72815 | 13.41 | 86.81 | 86.10 | 85.00 | 83.06 | 58.17 | 24.88 | 12.67 |
| erv | L01‐827A | 3.88 | 78.38 | 77.41 | 76.04 | 74.66 | 51.27 | 23.39 | 11.57 |
| nig | IG 72539 | 4.49 | 78.59 | 77.91 | 77.17 | 78.02 | 59.89 | 18.13 | 9.02 |
| nig | IG 72541 | 1.28 | 74.43 | 73.70 | 73.05 | 74.42 | 61.58 | 12.84 | 7.80 |
UTR = untranslated region.
a
cul = L. culinaris; ori = L. orientalis; tom = L. tomentosus; ode = L. odemensis; lam = L. lamottei; erv = L. ervoides; nig = L. nigricans.