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SL-sites consensus sequence. (A) Sequence logo of the sequence environment surrounding SL1 or (B) SL2 trans-splice sites determined by SL-quant on the SRR1585277 dataset in single-end mode. (C) Proportion of AG sequences in SL trans-splice sites identified by SL-quant on the SRR1585277 dataset with the method used in Tourasse et al. 2017 [14] and with SL-quant in single-end mode with or without the sensitive option (-s).
