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. 2018 Jul 20;6:e5056. doi: 10.7717/peerj.5056

Table 1. Predicted in silico raw score conversion scheme for each immunological parameter.

Parameter (max. weightage) Raw score range for conversion (max. weightage (%))
High Intermediate Low
MHC class II (58%) 0.01–4.65 nM, (58%) 4.66–9.28 nM, (39%) ≥9.29 nM, (20%)
MHC class I (42%) 0–50 nM, (42%) 51–500 nM, (28%) 501–5,000 nM, (14%)
SAa (34%) 2.531–3.149, (34%) 1.913–2.530, (23%) 1.294–1.912, (12%)
HYb (29%) 3.444–4.614, (29%) 2.615–3.443, (19%) 0–2.614, (9%)
ATc (19%) ≥1.0, (19%) <1.0, (13%) N/A
LEd (12%) ≥5.82, (12%) 0.36–5.81, (8%) 0–0.35, (4%)
RNA 2°e (6%) Does not form hairpin loop, (6%) N/A Forms hairpin loop, (4%)

Notes:

N/A, Not applicable.

a

Surface accessibility.

b

Hydrophilicity.

c

Antigenicity.

d

Linear epitope.

e

RNA secondary structure.