Skip to main content
. 2018 Jul 20;6:e5056. doi: 10.7717/peerj.5056

Table 2. Top 20 shortlisted peptide sequence candidates with scores generated from human MHC class I and II epitope prediction parameters.

Sequence ID Full sequence KRAS mutation Modified residue MHC class IIa MHC class Ib Total scorec
68-D YKLDVVGADGVGKSA G12D V7D 58 42 100
68-A YKLDVVGAAGVGKSA G12A V7D 58 42 100
68-S YKLDVVGASGVGKSA G12S V7D 58 42 100
68-V* YKLDVVGAVGVGKSA G12V V7D 58 42 100
93-V YKLVLVGAVGVGKSA G12V V8L 58 42 100
139-A YKLVVVPAAGVGKSA G12A G10P 58 42 100
64-D YKLYVVGADGVGKSA G12D V7Y 58 42 100
103-R YKLVVAGARGVGKSA G12R V9A 58 42 100
116-R YKLVVHGARGVGKSA G12R V9H 58 42 100
135-D YKLVVVIADGVGKSA G12D G10I 58 42 100
138-S YKLVVVKASGVGKSA G12S G10K 58 42 100
112-A YKLVVNGAAGVGKSA G12A V9N 58 42 100
164-D* YKLVVVGAGDVYKSA G13D G15Y 58 42 100
133-S YKLVVVLASGVGKSA G12S G10L 58 42 100
135-A YKLVVVIAAGVGKSA G12A G10I 58 42 100
84-S YKLVYVGASGVGKSA G12S V8Y 58 42 100
78-D YKLDVVGAVDVGKSA G13D V7D 58 42 100
224-D* YKLVVVGAGDVGKSY G13D A18Y 58 42 100
67-D YKLTVVGAGDVGKSA G13D V7T 58 42 100
194-D YKLVVVGAGDVGQSA G13D K16Q 58 42 100
Control 1* YKLVVVGAVGVGKSA G12V 58 42 100
Control 2* YKLVVVGAGDVGKSA G13D 58 42 100
wtKRAS* YKLVVVGAGGVGKSA 58 42 100

Notes:

Sequence ID denoted (*) were selected for immunogenicity assessment.

a

Total score converted (as referred to Table 1) from the percentile score of human MHC class II epitope prediction generated from IEDB.

b

Total score converted (as referred to Table 1) from the IC50 score of human MHC class I epitope prediction generated from IEDB.

c

Total score of a and b.