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. 2018 Jul 20;6:e5056. doi: 10.7717/peerj.5056

Table 3. Top 20 shortlisted peptide sequence candidates with scores generated from mouse MHC class I and II epitope prediction parameters.

Sequence ID Full sequence KRAS mutation Modified residue MHC class IIa MHC class Ib Total scorec
138-S YKLVVVKASGVGKSA G12S G10K 58 28 86
84-S YKLVYVGASGVGKSA G12S V8Y 39 42 81
135-A YKLVVVIAAGVGKSA G12A G10I 39 28 67
139-A YKLVVVPAAGVGKSA G12A G10P 39 28 67
93-V YKLVLVGAVGVGKSA G12V V8L 39 28 67
78-D YKLDVVGAVDVGKSA G13D V7D 39 28 67
164-D* YKLVVVGAGDVYKSA G13D G15Y 39 28 67
68-A YKLDVVGAAGVGKSA G12A V7D 20 42 62
68-V* YKLDVVGAVGVGKSA G12V V7D 20 42 62
64-D YKLYVVGADGVGKSA G12D V7Y 20 42 62
68-S YKLDVVGASGVGKSA G12S V7D 20 42 62
103-R YKLVVAGARGVGKSA G12R V9A 20 42 62
112-A YKLVVNGAAGVGKSA G12A V9N 20 42 62
67-D YKLTVVGAGDVGKSA G13D V7T 20 42 62
68-D YKLDVVGADGVGKSA G12D V7D 20 28 48
133-S YKLVVVLASGVGKSA G12S G10L 20 28 48
224-D* YKLVVVGAGDVGKSY G13D A18Y 20 28 48
135-D YKLVVVIADGVGKSA G12D G10I 20 28 48
116-R YKLVVHGARGVGKSA G12R V9H 20 28 48
194-D YKLVVVGAGDVGQSA G13D K16Q 20 28 48
Control 1* YKLVVVGAVGVGKSA G12V 20 28 48
Control 2* YKLVVVGAGDVGKSA G13D 20 28 48
wtKRAS* YKLVVVGAGGVGKSA 20 28 48

Notes:

Sequence ID denoted (*) were selected for immunogenicity assessment.

a

Total score converted (as referred to Table 1) from the percentile score of mouse MHC class II epitope prediction generated from IEDB.

b

Total score converted (as referred to Table 1) from the IC50 score of mouse MHC class I epitope prediction generated from IEDB.

c

Total score of a and b.