Table 3. Top 20 shortlisted peptide sequence candidates with scores generated from mouse MHC class I and II epitope prediction parameters.
Sequence ID | Full sequence | KRAS mutation | Modified residue | MHC class IIa | MHC class Ib | Total scorec |
---|---|---|---|---|---|---|
138-S | YKLVVVKASGVGKSA | G12S | G10K | 58 | 28 | 86 |
84-S | YKLVYVGASGVGKSA | G12S | V8Y | 39 | 42 | 81 |
135-A | YKLVVVIAAGVGKSA | G12A | G10I | 39 | 28 | 67 |
139-A | YKLVVVPAAGVGKSA | G12A | G10P | 39 | 28 | 67 |
93-V | YKLVLVGAVGVGKSA | G12V | V8L | 39 | 28 | 67 |
78-D | YKLDVVGAVDVGKSA | G13D | V7D | 39 | 28 | 67 |
164-D* | YKLVVVGAGDVYKSA | G13D | G15Y | 39 | 28 | 67 |
68-A | YKLDVVGAAGVGKSA | G12A | V7D | 20 | 42 | 62 |
68-V* | YKLDVVGAVGVGKSA | G12V | V7D | 20 | 42 | 62 |
64-D | YKLYVVGADGVGKSA | G12D | V7Y | 20 | 42 | 62 |
68-S | YKLDVVGASGVGKSA | G12S | V7D | 20 | 42 | 62 |
103-R | YKLVVAGARGVGKSA | G12R | V9A | 20 | 42 | 62 |
112-A | YKLVVNGAAGVGKSA | G12A | V9N | 20 | 42 | 62 |
67-D | YKLTVVGAGDVGKSA | G13D | V7T | 20 | 42 | 62 |
68-D | YKLDVVGADGVGKSA | G12D | V7D | 20 | 28 | 48 |
133-S | YKLVVVLASGVGKSA | G12S | G10L | 20 | 28 | 48 |
224-D* | YKLVVVGAGDVGKSY | G13D | A18Y | 20 | 28 | 48 |
135-D | YKLVVVIADGVGKSA | G12D | G10I | 20 | 28 | 48 |
116-R | YKLVVHGARGVGKSA | G12R | V9H | 20 | 28 | 48 |
194-D | YKLVVVGAGDVGQSA | G13D | K16Q | 20 | 28 | 48 |
Control 1* | YKLVVVGAVGVGKSA | G12V | – | 20 | 28 | 48 |
Control 2* | YKLVVVGAGDVGKSA | G13D | – | 20 | 28 | 48 |
wtKRAS* | YKLVVVGAGGVGKSA | – | – | 20 | 28 | 48 |
Notes:
Sequence ID denoted (*) were selected for immunogenicity assessment.
Total score converted (as referred to Table 1) from the percentile score of mouse MHC class II epitope prediction generated from IEDB.
Total score converted (as referred to Table 1) from the IC50 score of mouse MHC class I epitope prediction generated from IEDB.
Total score of a and b.