Table 1.
Expression of C. quitensis genes involved in phenylpropanoid biosynthesis pathway.
| Contig ID | Arabidopsis ortholog | Genes* | EC | FPKM | p-value | |
|---|---|---|---|---|---|---|
| LAB | ANT | |||||
| Contig20542 | AT2G37040 | PAL1 | EC:4.3.1.24 | 26.7 | 131.3 | 1.6 × 10−13 |
| Contig20541 | AT2G37040 | PAL1 | EC:4.3.1.24 | 8.5 | 31.7 | 4.2 × 10−4 |
| Contig49114 | AT2G30490 | C4H | EC:1.14.13.11 | 2.4 | 15.8 | 1.7 × 10−3 |
| Contig70533 | AT2G30490 | C4H | EC:1.14.13.11 | 1.9 | 18.9 | 2.4 × 10−4 |
| Contig22559 | AT2G40890 | CYP98A3 | EC:1.14.13.36 | 17.6 | 48.4 | 6.3 × 10−4 |
| Contig24607 | AT2G40890 | CYP98A3 | EC:1.14.13.36 | 16.6 | 49.2 | 2.4 × 10−4 |
| Contig33804 | AT1G80820 | CCR2 | EC:1.2.1.44 | 73.4 | 229.9 | 4.4 × 10−13 |
| Contig7537 | AT1G67980 | CCoAMT | EC:2.1.1.104 | 39.7 | 141.8 | 1.1 × 10−10 |
| Contig16972 | AT4G34050 | CCoAOMT1 | EC:2.1.1.104 | 118.7 | 424.2 | 0 |
| Contig28757 | AT5G54160 | OMT1 | EC:2.1.1.68 | 854.4 | 1773.0 | 0 |
| Contig40563 | AT5G48930 | HCT | EC:2.3.1.133 | 12.2 | 42.2 | 1.4 × 10−4 |
| Contig29449 | AT5G48930 | HCT | EC:2.3.1.133 | 22.7 | 80.4 | 3.8 × 10−7 |
| Contig13431 | AT5G48930 | HCT | EC:2.3.1.133 | 15.1 | 76.2 | 3.9 × 10−9 |
| Contig24021 | AT1G72680 | CAD1 | EC:1.1.1.195 | 94.1 | 345.6 | 0 |
| Contig25236 | AT4G37990 | CAD8 | EC:1.1.1.195 | 24.5 | 88.0 | 1.3 × 10−7 |
| Contig3499 | AT1G62940 | 4CL | EC:6.2.1.12 | 3.2 | 49.5 | 9.6 × 10−10 |
| Contig24005 | AT1G68850 | PRX | EC:1.11.1.7 | 9.5 | 40.8 | 2.7 × 10−5 |
| Contig21838 | AT1G71695 | PRX | EC:1.11.1.7 | 46.1 | 179.7 | 2.7 × 10−14 |
| Contig28685 | AT2G38380 | PRX | EC:1.11.1.7 | 11.7 | 46.6 | 1.7 × 10−5 |
| Contig68730 | AT4G21960 | PRX | EC:1.11.1.7 | 46.2 | 120.3 | 5.0 × 10−6 |
| Contig24815 | AT4G21960 | PRX | EC:1.11.1.7 | 212.8 | 377.8 | 1.3 × 10−5 |
| Contig16077 | AT4G37520 | PRX | EC:1.11.1.7 | 1.2 | 24.1 | 9.2 × 10−6 |
| Contig18878 | AT5G05340 | PRX | EC:1.11.1.7 | 9.3 | 52.3 | 2.0 × 10−7 |
| Contig86217 | AT5G05340 | PRX | EC:1.11.1.7 | 13.9 | 73.4 | 3.7 × 10−9 |
| Contig66598 | AT5G05340 | PRX | EC:1.11.1.7 | 33.2 | 92.9 | 8.6 × 10−6 |
| Contig59359 | AT5G22410 | PRX | EC:1.11.1.7 | 175.6 | 319.5 | 3.4 × 10−5 |
| Contig31962 | AT5G66390 | PRX | EC:1.11.1.7 | 9.4 | 105.6 | 0 |
| Contig33299 | AT5G66390 | PRX | EC:1.11.1.7 | 11.1 | 101.3 | 1.8 × 10−15 |
| Contig2685 | AT5G13930 | CHS | EC:2.3.1.74 | 8.7 | 67.7 | 0 |
| Contig16136 | AT3G55120 | CHI | EC:5.5.1.6 | 36.8 | 80.0 | 0 |
PAL: phenylalanine ammonia lyase; C4H: cinnamic acid 4-hydroxylase; 4CL: 4-hydroxycinnamoyl-CoA ligase; CYP98A3: Cytochrome P450 98A3 (Coumaroyl shikimate 3′-monooxygenase); HCT: hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyl transferase; C3H: p-coumaroyl shikimate 3′-hydroxylase; CCoAOMT: caffeoyl-CoA O-methyltransferase; CCR: hydroxycinnamoyl-CoA reductase; F5H: ferulic acid 5-hydroxylase; COMT: caffeic acid/5-hydroxyferulic acid O-methyltransferase; CAD: cinnamyl alcohol dehydrogenase; PRX: peroxidase; CHS: chalcone synthase; CHI: chalcone isomerase.