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. 2018 Jul 23;50:38. doi: 10.1186/s12711-018-0409-7

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© The Author(s) 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 1 — Manhattan plots of direct SNP effects for crosses W1 * WA, W1 * WB, and W1 * WC. FDR threshold was 0.30 (solid line). If no SNP reached the FDR-threshold, the threshold could not be estimated (Panel 3). Locations of SNPs with q < 0.3 are indicated with an arrow