Table 3.

Pearson correlations between − log₁₀ p values of the three models for direct and indirect SNP effects for each cross

Effect	Cross	STM-RMM.t	STM-GLMM	RMM.t-GLMM
Direct	W1 * WA	0.98	0.96	0.97
	W1 * WB	0.97	0.93	0.93
	W1 * WC	0.96	0.96	0.93
Indirect	W1 * WA	0.98	0.95	0.96
	W1 * WB	0.98	0.97	0.96
	W1 * WC	0.97	0.97	0.96

All standard errors were less than 0.01