Table 5.

Significant (q < 0.30) direct and indirect SNP effects, their location, minor allele frequency (MAF), and estimated effect size α, based on model STM

Effect	Cross	SNP	Chr	Position (kbp)	MAF	α (days)	q-value	V (days2)	% of ${\sigma }_P^2$ explained	% of ${\sigma }_{A_T}^2$ explained
Direct	W1 * WA	rs317294317	2	88,120	0.34	22 ± 5	0.29	209	2.7	36.3
Direct	W1 * WB	rs313098101	2	8799	0.32	20 ± 5	0.16	167	1.5	11.8
		rs31610924	5	54,321	0.35	16 ± 4	0.06	122	1.1	8.6
		rs312488612	7	5646	0.47	35 ± 8	0.05	627	5.8	44.3
		rs14677635	9	17,018	0.22	26 ± 6	0.28	229	2.1	16.2