Table 1.
Variant category | Minor allele frequency < 0.01 | Minor allele frequency < 0.03 | ||
---|---|---|---|---|
SNPs | P-value | SNPs | P-value | |
Non-synonymous | 432 | 0.14 | 446 | 0.084 |
CADD > 12.36 | 294 | 0.17 | 300 | 0.24 |
Loss of function | 10 | 0.088 | 10 | 0.088 |
Sex and top two principal components were used as covariates in SKAT-O analyses.
CADD ≥ 12.37 corresponds to the predicted 2% most damaging of all possible single-nucleotide changes in the genome. SKAT-O = sequence kernel association test - optimal; SNP = single nucleotide polymorphism; CADD = Combined Annotation Dependent Depletion algorithm.