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. 2018 May 7;141(7):e53. doi: 10.1093/brain/awy124

Table 1.

Number of variants and SKAT-O association results

Variant category Minor allele frequency < 0.01 Minor allele frequency < 0.03
SNPs P-value SNPs P-value
Non-synonymous 432 0.14 446 0.084
CADD > 12.36 294 0.17 300 0.24
Loss of function 10 0.088 10 0.088

Sex and top two principal components were used as covariates in SKAT-O analyses.

CADD ≥ 12.37 corresponds to the predicted 2% most damaging of all possible single-nucleotide changes in the genome. SKAT-O = sequence kernel association test - optimal; SNP = single nucleotide polymorphism; CADD = Combined Annotation Dependent Depletion algorithm.