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. 2018 Jul 18;9:1577. doi: 10.3389/fmicb.2018.01577

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Copyright © 2018 Turnbull and Douville.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Amino acid sequence alignment derived phylogenies of human genomic endogenous retroviral sequences. A tree is shown for each search method (PR, protease BLAST; RT, reverse transcriptase BLAST; RVP, HMMER for RVP; RVT_1, HMMER for RVT_1). Leaves are colored by their classification through the evolutionary placement algorithm implemented by RAxML (see color legend at bottom of figure). Branch coloring represents bootstrap support, where red indicates poor support (closer to zero) and green indicates good support (closer to 100).