Table 5.
Accession | Condition | Tissue | Library | Sequencing platform | Samples | Reference |
---|---|---|---|---|---|---|
SRP064478 | sALS | Cervical spinal cord | Truseq Stranded Total RNA HT Kit (Illumina) | Nextseq 500 from ∼260 bp fragments | 7 sALS, 8 non-ALS, without technical replication | Brohawn et al., 2016 |
ERP000550 | Prostate cancer | Prostate | Oligo dT purification, fragmentation, and random hexamer PCR | HiSeq 2000 2 × 90 bp from ∼200 bp fragments | 14 tumor/non-tumor from same patient, without technical replication | Ren et al., 2012 |
SRP058722 | High grade ductal carcinoma in situ | Breast | ScriptSeq v2 RNA-Seq Kit (Epicenter) | HiSeq 2000 2 × 76 bp, fragment length unreported | 25 ductal carcinoma in situ, 10 cultured primary normal breast tissue, without technical replication | Abba et al., 2015 |