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. 2018 Jul 18;9:1577. doi: 10.3389/fmicb.2018.01577

Table 5.

RNA-Seq Libraries from the Sequence Read Archive analyzed in this study.

Accession Condition Tissue Library Sequencing platform Samples Reference
SRP064478 sALS Cervical spinal cord Truseq Stranded Total RNA HT Kit (Illumina) Nextseq 500 from ∼260 bp fragments 7 sALS, 8 non-ALS, without technical replication Brohawn et al., 2016
ERP000550 Prostate cancer Prostate Oligo dT purification, fragmentation, and random hexamer PCR HiSeq 2000 2 × 90 bp from ∼200 bp fragments 14 tumor/non-tumor from same patient, without technical replication Ren et al., 2012
SRP058722 High grade ductal carcinoma in situ Breast ScriptSeq v2 RNA-Seq Kit (Epicenter) HiSeq 2000 2 × 76 bp, fragment length unreported 25 ductal carcinoma in situ, 10 cultured primary normal breast tissue, without technical replication Abba et al., 2015