Table 5.

RNA-Seq Libraries from the Sequence Read Archive analyzed in this study.

Accession	Condition	Tissue	Library	Sequencing platform	Samples	Reference
SRP064478	sALS	Cervical spinal cord	Truseq Stranded Total RNA HT Kit (Illumina)	Nextseq 500 from ∼260 bp fragments	7 sALS, 8 non-ALS, without technical replication	Brohawn et al., 2016
ERP000550	Prostate cancer	Prostate	Oligo dT purification, fragmentation, and random hexamer PCR	HiSeq 2000 2 × 90 bp from ∼200 bp fragments	14 tumor/non-tumor from same patient, without technical replication	Ren et al., 2012
SRP058722	High grade ductal carcinoma in situ	Breast	ScriptSeq v2 RNA-Seq Kit (Epicenter)	HiSeq 2000 2 × 76 bp, fragment length unreported	25 ductal carcinoma in situ, 10 cultured primary normal breast tissue, without technical replication	Abba et al., 2015