Table 1.
Assembly summary.
| Illumina assembly | PacBio + Illumina | |
|---|---|---|
| Number of contigs | 836 | 687 |
| Total contigs size (bp) | 35,743,205 | 35,951,513 |
| Min contig length (bp) | 1000 | 947 |
| Max contig length (bp) | 462,380 | 665,523 |
| N50 contigs (kb) | 131 | 230 |
| Number of scaffolds | 582 | 158 |
| Total scaffolds size (bp) | 35,858,128 | 36,207,399 |
| Min scaffolds length (bp) | 1000 | 977 |
| Max scaffolds length (bp) | 1,235,734 | 2,800,880 |
| N50 scaffolds (kb) | 213.4 | 838.183 |
| N90 scaffolds (kb) | 12.2 (249) | 188.1 (49) |
The N90 and N50 scaffolds are the length of the scaffolds covering 90 and 50% of the genome, respectively. The N90 and N50 were calculated using 39 Mb as genome size. In parenthesis are the numbers of contigs/scaffolds required to cover 90% of the genome length.