Table 1. Amino acid representation among ADE+ and ade- isolates.
Amino Acids | hnRNPA2-Sup35 Fusion Library | hnRNPA1-Sup35 Fusion Library | ||||||
---|---|---|---|---|---|---|---|---|
Frequency | ln(ORA) ǂ | P value | Frequency | ln(ORA) ǂ | P value | |||
ADE+ Library | ade- Library | ADE+ Library | ade- Library | |||||
Valine | 0.078 | 0.023 | 1.30 | 7.8 x 10−4 | 0.083 | 0.042 | 0.74 | 0.049 |
Methionine | 0.041 | 0.013 | 1.21 | 0.024 | 0.033 | 0.011 | 1.12 | 0.074 |
Leucine | 0.125 | 0.045 | 1.11 | 1.7 x 10−4 | 0.100 | 0.042 | 0.94 | 6.3 x 10−3 |
Isoleucine | 0.047 | 0.020 | 0.89 | 0.049 | 0.083 | 0.033 | 0.97 | 9.2 x 10−3 |
Tyrosine | 0.057 | 0.040 | 0.38 | 0.29 | 0.038 | 0.031 | 0.21 | 0.65 |
Alanine | 0.051 | 0.040 | 0.25 | 0.58 | 0.038 | 0.036 | 0.039 | 1.00 |
Phenylalanine | 0.047 | 0.040 | 0.18 | 0.71 | 0.067 | 0.042 | 0.50 | 0.19 |
Proline | 0.057 | 0.053 | 0.10 | 0.87 | 0.063 | 0.064 | -0.023 | 1.00 |
Threonine | 0.057 | 0.055 | 0.046 | 1.00 | 0.054 | 0.061 | -0.13 | 0.86 |
Serine | 0.128 | 0.125 | 0.031 | 0.91 | 0.125 | 0.119 | 0.052 | 0.90 |
Tryptophan | 0.024 | 0.025 | -0.057 | 1.00 | 0.033 | 0.025 | 0.30 | 0.62 |
Aspartic Acid | 0.041 | 0.053 | -0.27 | 0.59 | 0.021 | 0.047 | -0.85 | 0.12 |
Glycine | 0.068 | 0.088 | -0.28 | 0.39 | 0.033 | 0.075 | -0.85 | 0.034 |
Histidine | 0.034 | 0.045 | -0.30 | 0.56 | 0.050 | 0.042 | 0.19 | 0.69 |
Lysine | 0.020 | 0.028 | -0.31 | 0.63 | 0.004 | 0.033 | -2.11 | 0.019 |
Cysteine | 0.030 | 0.050 | -0.52 | 0.25 | 0.063 | 0.036 | 0.58 | 0.17 |
Arginine | 0.054 | 0.110 | -0.77 | 9.4 x 10−3 | 0.058 | 0.125 | -0.84 | 7.6 x 10−3 |
Glutamic Acid | 0.014 | 0.030 | -0.81 | 0.20 | 0.017 | 0.019 | -0.16 | 1.00 |
Glutamine | 0.014 | 0.035 | -0.97 | 0.093 | 0.017 | 0.039 | -0.87 | 0.15 |
Asparagine | 0.014 | 0.085 | -1.91 | 1.5 x 10−5 | 0.021 | 0.078 | -1.38 | 2.9 x 10−3 |
Groups of amino acids | ||||||||
Aromatic (FWY) | 0.128 | 0.105 | 0.23 | 0.34 | 0.138 | 0.097 | 0.39 | 0.15 |
Charged (DEKR) | 0.128 | 0.220 | -0.65 | 2.0 x 10−3 | 0.100 | 0.225 | -0.96 | 6.9 x 10−5 |
Hydrophobic (ILMV) | 0.291 | 0.100 | 1.30 | 1.7 x 10−10 | 0.300 | 0.128 | 1.07 | 3.5 x 10−7 |
Polar (GHST) | 0.287 | 0.313 | -0.12 | 0.50 | 0.263 | 0.297 | -0.17 | 0.41 |
QN | 0.027 | 0.120 | -1.59 | 3.8 x 10−6 | 0.038 | 0.117 | -1.22 | 5.1 x 10−4 |
ǂ Odds ratios (ORA) were calculated as in Eq 1, and represent the degree of overrepresentation or underrepresentation of each amino acid among constitutive ADE+ isolates.