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. 2018 Jul 13;14(7):e1007517. doi: 10.1371/journal.pgen.1007517

Table 1. Amino acid representation among ADE+ and ade- isolates.

Amino Acids hnRNPA2-Sup35 Fusion Library hnRNPA1-Sup35 Fusion Library
Frequency ln(ORA) ǂ P value Frequency ln(ORA) ǂ P value
ADE+ Library ade- Library ADE+ Library ade- Library
Valine 0.078 0.023 1.30 7.8 x 10−4 0.083 0.042 0.74 0.049
Methionine 0.041 0.013 1.21 0.024 0.033 0.011 1.12 0.074
Leucine 0.125 0.045 1.11 1.7 x 10−4 0.100 0.042 0.94 6.3 x 10−3
Isoleucine 0.047 0.020 0.89 0.049 0.083 0.033 0.97 9.2 x 10−3
Tyrosine 0.057 0.040 0.38 0.29 0.038 0.031 0.21 0.65
Alanine 0.051 0.040 0.25 0.58 0.038 0.036 0.039 1.00
Phenylalanine 0.047 0.040 0.18 0.71 0.067 0.042 0.50 0.19
Proline 0.057 0.053 0.10 0.87 0.063 0.064 -0.023 1.00
Threonine 0.057 0.055 0.046 1.00 0.054 0.061 -0.13 0.86
Serine 0.128 0.125 0.031 0.91 0.125 0.119 0.052 0.90
Tryptophan 0.024 0.025 -0.057 1.00 0.033 0.025 0.30 0.62
Aspartic Acid 0.041 0.053 -0.27 0.59 0.021 0.047 -0.85 0.12
Glycine 0.068 0.088 -0.28 0.39 0.033 0.075 -0.85 0.034
Histidine 0.034 0.045 -0.30 0.56 0.050 0.042 0.19 0.69
Lysine 0.020 0.028 -0.31 0.63 0.004 0.033 -2.11 0.019
Cysteine 0.030 0.050 -0.52 0.25 0.063 0.036 0.58 0.17
Arginine 0.054 0.110 -0.77 9.4 x 10−3 0.058 0.125 -0.84 7.6 x 10−3
Glutamic Acid 0.014 0.030 -0.81 0.20 0.017 0.019 -0.16 1.00
Glutamine 0.014 0.035 -0.97 0.093 0.017 0.039 -0.87 0.15
Asparagine 0.014 0.085 -1.91 1.5 x 10−5 0.021 0.078 -1.38 2.9 x 10−3
Groups of amino acids
 Aromatic (FWY) 0.128 0.105 0.23 0.34 0.138 0.097 0.39 0.15
 Charged (DEKR) 0.128 0.220 -0.65 2.0 x 10−3 0.100 0.225 -0.96 6.9 x 10−5
 Hydrophobic (ILMV) 0.291 0.100 1.30 1.7 x 10−10 0.300 0.128 1.07 3.5 x 10−7
 Polar (GHST) 0.287 0.313 -0.12 0.50 0.263 0.297 -0.17 0.41
 QN 0.027 0.120 -1.59 3.8 x 10−6 0.038 0.117 -1.22 5.1 x 10−4

ǂ Odds ratios (ORA) were calculated as in Eq 1, and represent the degree of overrepresentation or underrepresentation of each amino acid among constitutive ADE+ isolates.