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. 2018 Jul 19;9:1499. doi: 10.3389/fmicb.2018.01499

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Copyright © 2018 González-Torres and Gabaldón.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Maximum likelihood trees of the eight S. ruber strains included in this study. Members of the five CFs identified (box) were considered and labeled with color-coded dots. The consensus tree based on the whole aligned core genome is shown in the box. The trees surrounding the genome were calculated based on alignments of randomly selected 30 Kb core genome regions, whose relative positions in S. ruber M8 are indicated in brackets. In all the cases S. ruber M8 was used as a reference genome to locate the position of the sequence used to generate the trees.