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. 2017 Dec 19;77(2):313–341. doi: 10.1007/s00285-017-1197-3

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© The Author(s) 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

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Fig. 7 — The Hox gene cluster of B. lanceolatum. How the pairwise distances are created is described in Sect. 4.3.1. The left site is a composite of three rows. The first row shows the cluster and the order on the genome. In the second and third row the results of Gene-CluEDO are displayed. They are created with $β = 0.0025$ . The size of the black box in a cell coincides with the likelihood of this cell. The second row shows the probability that a sequence is on the edge of the cluster. The third row gives the probability that two sequences are adjacent to each other in the cluster. The right side then shows the network that is created with the NeighborNet (Bryant et al. 2004, 2007) algorithm. The network scale is indicated by a grey scale, expressed as substitutions per 100 sites