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. 2018 Jun 1;10(7):1837–1851. doi: 10.1093/gbe/evy109

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© The Author(s) 2018. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Fig. 1. — —Characterization of alpha satellite DNA diversity in the XmnI monomer data set. (A) PCA projection on principal components 1 and 2 of the normalized 5-mer frequency vectors for all sequences from the CPO XmnI monomer data set. Each point represents a monomer sequence. (B) Prediction of the C1 (purple) and C2 (pastel green) sequences from CSO XmnI monomer data set by using the PCA projection of CPO monomers. (C) PCA projection of CPO XmnI monomer data set with sequences colored according to their assignment to the C1 (purple), C2 (pastel green), C5 (red) or C6 (orange) alpha satellite family, based on a hierarchical classification method (see Materials and methods).