Table 5. Performance of top 5 binary classification models of LP for the external validation set.
Model a | AUC | CA | SP | SE |
Est_CT | 0.82 | 0.81 | 0.89 | 0.74 |
AP2D_KNN | 0.76 | 0.79 | 0.89 | 0.71 |
KR_CT | 0.77 | 0.76 | 0.89 | 0.65 |
AP2D_RF | 0.74 | 0.76 | 0.78 | 0.74 |
Graph_NB | 0.76 | 0.74 | 0.82 | 0.68 |
aAP2D: AP2D fingerprint, Est: estate fingerprint, Ext: extended fingerprint, FP: fingerprint, Graph: graphonly fingerprint, KR: Klekota-Roth fingerprint, Maccs: MACCS fingerprint, Pub: PubChem fingerprint, Sub: substructure fingerprint; ANN: artificial neural network, CT: classification tree, kNN: k-nearest neighbor, NB: naïve bayes, RF: random forest, SVM: support vector machine.