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. 2018 Jul 26;8:11269. doi: 10.1038/s41598-018-29620-2

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Whole genome diversity of Maf Lineages (175 L5 and 78 L6 genomes). (a) Number of SNPs between Maf genomes and the hypothetical MTBC ancestor (the median fixed SNPs of L5 (934) is lower (W = 417, p-value < 2.2e-16) compared to L6 (1,039). (b) Pairwise SNPs between genomes within each lineage (the median of the pairwise SNPs is lower (W = 234, p-value < 2.2e-16) in L5 (212) compared to L6 (334). (c) Whole genome average nucleotide diversity (π) between L5 and L6 (the mean diversity of L5 (0.000076) is significantly (non-overlapping 95% confidence intervals) lower than L6 (0.000110). Error bars indicate 95% confidence intervals.