Table 1.
Pose I.D | XP Glide Score | MM-GBSA score | Effective Binding Energy Ia | Effective Binding Energy IIb | Ligand solvent GB | Ligand strain energy | Linear Interaction Energyc |
---|---|---|---|---|---|---|---|
Selected Le a -5 docking poses | |||||||
a03 | −8.898 | −52.583 | −0.061 | −0.907 | −32.956 | 7.368 | −19.627 |
a04 | −10.036 | −52.168 | −0.061 | −0.899 | −40.076 | 15.161 | −12.092 |
a06 | −10.182 | −49.319 | −0.058 | −0.850 | −37.542 | 18.196 | −11.777 |
a08 | −10.310 | −45.768 | −0.054 | −0.789 | −32.258 | 14.674 | −13.509 |
a09 | −8.005 | −45.628 | −0.053 | −0.787 | −37.112 | 10.394 | −8.517 |
Selected Leb-6 docking poses | |||||||
b01 | −8.302 | −56.176 | −0.056 | −0.826 | −53.394 | 0.935 | −2.782 |
b02 | −8.798 | −55.204 | −0.055 | −0.812 | −36.825 | 0.081 | −18.379 |
b05 | −8.395 | −48.488 | −0.048 | −0.713 | −38.728 | 11.456 | −9.759 |
b07 | −8.046 | −46.198 | −0.046 | −0.679 | −39.974 | 5.267 | −6.224 |
b08 | −9.352 | −44.813 | −0.045 | −0.659 | −41.044 | 5.922 | −3.769 |
Candidate poses selected from the ten highest ranked Lea-5 and Leb-6 docking scores based on lowest Effective Binding Energy I and II, that predict CfaB binding near/on Lewis antigen moieties of either the Lea-5 or Leb-6 glycan. All energy score units are measured in kcal/mol.
aMM-GBSA score/molecular weight of glycan.
bMM-GBSA score/number of heavy atoms in glycan.
cMM-GBSA score - Ligand solvent GB.