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. 2018 Jul 26;8:11250. doi: 10.1038/s41598-018-29258-0

Table 1.

In-silico docking analysis predicts relatively higher binding affinity of the CFA/I docking site to Lea-5.

Pose I.D XP Glide Score MM-GBSA score Effective Binding Energy Ia Effective Binding Energy IIb Ligand solvent GB Ligand strain energy Linear Interaction Energyc
Selected Le a -5 docking poses
a03 −8.898 −52.583 −0.061 −0.907 −32.956 7.368 −19.627
a04 −10.036 −52.168 −0.061 −0.899 −40.076 15.161 −12.092
a06 −10.182 −49.319 −0.058 −0.850 −37.542 18.196 −11.777
a08 −10.310 −45.768 −0.054 −0.789 −32.258 14.674 −13.509
a09 −8.005 −45.628 −0.053 −0.787 −37.112 10.394 −8.517
Selected Leb-6 docking poses
b01 −8.302 −56.176 −0.056 −0.826 −53.394 0.935 −2.782
b02 −8.798 −55.204 −0.055 −0.812 −36.825 0.081 −18.379
b05 −8.395 −48.488 −0.048 −0.713 −38.728 11.456 −9.759
b07 −8.046 −46.198 −0.046 −0.679 −39.974 5.267 −6.224
b08 −9.352 −44.813 −0.045 −0.659 −41.044 5.922 −3.769

Candidate poses selected from the ten highest ranked Lea-5 and Leb-6 docking scores based on lowest Effective Binding Energy I and II, that predict CfaB binding near/on Lewis antigen moieties of either the Lea-5 or Leb-6 glycan. All energy score units are measured in kcal/mol.

aMM-GBSA score/molecular weight of glycan.

bMM-GBSA score/number of heavy atoms in glycan.

cMM-GBSA score - Ligand solvent GB.