Table 3. Evaluation of selective pressure during the MA experiments: position of BPS.
| BPSs in coding/noncoding DNA | |||||||
|---|---|---|---|---|---|---|---|
| Strain | Observed | Expected from genomea | χ2a | P | Expected from simulationsb | χ2b | P |
| MA experiments on LB | |||||||
| mutD5 | 5.47 | 5.74 | 2.0 | 0.15 | 5.51 | 0.05 | 0.83 |
| mutD5 mutL | 6.96 | 5.74 | 89 | < 0.001 | 5.87 | 70 | < 0.001 |
| mutD5 dinB | 5.50 | 5.74 | 1.35 | 0.24 | 5.54 | 0.04 | 0.85 |
| mutD5 dinB umuDC | 5.84 | 5.74 | 0.80 | 0.37 | 5.59 | 1.6 | 0.21 |
| mutD5 lexA3 | 5.73 | 5.74 | 0.01 | 0.93 | 5.59 | 0.55 | 0.5 |
| MA experiments on minimal medium | |||||||
| mutD5 | 4.03 | 5.74 | 41 | < 0.001 | 5.68 | 38 | < 0.001 |
| mutD5 mutL | 6.88 | 5.74 | 17 | < 0.001 | 5.81 | 14 | < 0.001 |
BPS, base pair substitution; MA, mutation accumulation.
χ2 values were calculated comparing the observed value to the expected value calculated from the ratio of coding vs. noncoding nucleotides in the MG1655 genome, which is 5.74 (Lee et al. 2012).
χ2 values were calculated comparing the observed value to the value expected from 1000 Monte Carlo simulations using the BPS spectra of each strain.