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. Author manuscript; available in PMC: 2018 Jul 27.
Published in final edited form as: Cell Rep. 2018 Jul 3;24(1):155–168.e5. doi: 10.1016/j.celrep.2018.06.012
REAGENT or RESOURCE Antibodies SOURCE IDENTIFIER
Antibodies

Anti-Caspase-11 clone 17D9 Cell Signaling Technology 14340
Anti-GBP2 Proteintech 11854–1-AP
Anti-phospho-Stat1 Y701 58D6 Cell Signaling technology 9167
Anti-STAT1 Cell signaling technology 9172
Rabbit polyclonal serum against L. pneumophila Isberg Lab (Laguna et al., 2006; Creasey and Isberg, 2012)
Rat polyclonal serum against L. pneumophila Isberg Lab (Laguna et al., 2006; Creasey and Isberg, 2012)
Anti-ASC Adipogen AG-25B-0006
Anti-Gapdh 14C10 Cell Signaling Technology 2118
Anti-Gapdh D4C6R Cell Signaling Technology 97166
Anti-IFNβ (ELISA capture antibody) Santa Cruz sc-57201
Anti-IFNβ (ELISA detection antibody) R&D Systems 32400–1
Bacterial and Virus Strains
L. pneumophila Lp02 ΔflaA Isberg Lab (Creasey and Isberg, 2012; Asrat et al., 2014)
L. pneumophila Lp02 ΔflaA ΔsdhA Isberg Lab (Creasey and Isberg, 2012)
L. pneumophila Lp03 (dotA-) ΔflaA Isberg Lab (Asrat et al., 2014)
L. pneumophila Lp02 ΔflaA Ptac:: PahpC::Gfp Isberg Lab (Coers et al., 2007; O’Connor et al., 2012)
L. pneumophila Lp02 ΔflaA ΔsdhA Ptac:: PahpC::Gfp Isberg Lab (Coers et al., 2007; O’Connor et al., 2012)
L. pneumophila Lp02 ΔflaA pJB908 Isberg Lab (Laguna et al., 2006; Ge et al., 2012)
L. pneumophila Lp02 ΔflaA ΔsdhA pJB908 Isberg Lab (Laguna et al., 2006; Ge et al., 2012)
Biological Samples
Human Bronchoalveolar lavage cells Tufts Medical Center, Alexander Panda, M.D. De-identified volunteers
Human peripheral whole blood NY Biologics De-identified whole blood
Chemicals, Peptides, and Recombinant Proteins
Purified NA/LE Mouse anti-mouse IFNARα/β receptor MAR1–5A3 BD PharMingen 561183
Purified NA/LE Mouse IgG1 κ Isotype control BD PharMingen 553447
Jak inhibitor Ruxolitinib Cayman Chemical 11609
Recombinant mouse IFNβ PBL 12400–1
TMB substrate ThermoFisher N301
Deposited Data
Mi-Seq GSE110678 This paper N/A
Experimental Models: Cell Lines
Murine bone marrow derived macrophages Mouse long bones N/A
Experimental Models: Organisms/Strains
C57BL/6 Jackson Laboratory 000664
Ifnar−/− (B6.129S2-Ifnar1tm1Agt/Mmjax) Jackson Laboratory 32045-JAX
Ifnb−/− Dr. Stephanie Vogel N/A
GBPchr3−/− Dr. Jorn Coers; Dr. Masahiro Yamamoto (Yamamoto et al., 2012; Pilla et al., 2014)
Casp11−/− Dr. Vishva Dixit (Kayagaki et al., 2011,2013)
Casp1 −/−Casp11−/− Jackson Laboratory (Lietal., 1995)
Asc−/− Dr. Kate Fitzgerald (Zheng et al., 2011)
Oligonucleotides
Forward and reverse primers for Gbps Sigma (Kim et al., 2011) Table S2
Forward and reverse primers for Casp11 Sigma (Kayagaki et al., 2011)
Murine Irf7: (F) 5’-CTTCAGCACTTTCTTCCGAGA-3’; (R) 5’-TGTAGTGTGGTGACCCTTGC-3’ Sigma (Rocha et al., 2015) Table S4
Murine Isg15: (F) 5’-GAGCTAGAGCCTGCAGCAAT-3’; (R) 5’-TTCTGGGCAATCTGCTTCTT-3’ Sigma (Pott et al., 2011)
Murine Mx1: (F) 5’-TCTGAGGAGAGCCAGACGAT-3’; (R) 5’-ACTCTGGTCCCCAATGACAG-3’ Sigma (Pottetal., 2011)
human IRF7 (F) 5’-CTTGGCTCCTGAGAGGGCAG-3’; (R) 5’-CGAAGTGCTTCCAGGGCA-3’ Sigma (Dill et al., 2014) Table S5
human ISG15 (F) 5’-TCCTGCTGGTGGTGGACAA-3’; (R) 5’ -TTGTTATTCCTCACCAGGATGCT-3’ Sigma (Dill et al., 2014) Table S5
human Mx1 (F) 5’-GTGCATTGCAGAAGGTCAGA-3’; (R) 5’-TCAGGAGCCAGCTTAGGTGT-3’ Sigma (Dill et al., 2014) Table S5
human GAPDH (F) 5’-GCTCCTCCTGTTCGACA GTCA-3’; (R) 5’-ACCTTCCCCATGGTGTCTGA-3’ Sigma (Dill et al., 2014) Table S5
pJB908 plasmid amplification (F) 5’-TCAGGAA GCACAAATGTCAATG-3’; (R) 5’-GGTCTA CACCACCAAAATCACG-3’ Sigma (Ge et al., 2012)
Primers for pUC18 flanks the M13 cloning site of the vector. (F) 5’-CAGGAAACAGCTATGAC −3’;
(R) 5’-GTAAAACGACGGCCAG-3’
Sigma Isberg Lab
Recombinant DNA
pJB908 (pMMB66EH oriRSF1010 ΔoriT tdDi bla+) Isberg Lab (Laguna et al., 2006)
Ptac:: PahpC::Gfp (pMMB207Dmob267) Isberg Lab (O’Connor et al., 2012)
Software and Algorithms
GraphPad Prism7 GraphPad N/A
Adobe Photoshop Adobe N/A
Affinity Designer Affinity N/A