Table 1.
Statistics of prediction results in four expression datasets
| U133A | NCI60 | HPM_PRT | GTEx | Combined |
Recurrent ≥2 |
Recurrent ≥3 |
Recurrent = 4 |
|
|---|---|---|---|---|---|---|---|---|
| Drugs | 696 | 580 | 753 | 930 | 1,034 | 864 | 591 | 355 |
| Pathways | 781 | 678 | 666 | 623 | 954 | 787 | 536 | 270 |
| Tissues | 84 | 108 | 30 | 53 | 259 | – | – | – |
| Full results | ||||||||
| Connections (D‐P‐T) | 137,199 | 76,191 | 37,719 | 217,401 | 467,396 | – | – | – |
| Connections (D‐P) | 47,341 | 38,666 | 22,384 | 67,305 | 115,905 | 41,098 | 14,822 | 3,871 |
| P per D (SD) | 68 (102) | 67 (91) | 30 (49) | 72 (100) | 112 (162) | 48 (76) | 25 (37) | 11 (17) |
| T per D (SD) | 9 (8) | 12 (11) | 5 (3) | 12 (9) | 27 (23) | – | – | – |
| Results after filtering parent pathways | ||||||||
| Connections (D‐P‐T) | 53,857 | 31,824 | 16,067 | 84,816 | 186,022 | – | – | – |
| Connections (D‐P) | 20,186 | 15,863 | 9,878 | 29,675 | 54,932 | 15,623 | 4,145 | 902 |
| P per D (SD) | 29 (41) | 27 (37) | 13 (19) | 32 (43) | 53 (77) | 18 (28) | 7 (9) | 3 (2) |
| T per D (SD) | 9 (8) | 12 (11) | 5 (3) | 12 (9) | 27 (23) | – | – | – |
D, drug; P, pathway; T, tissue; SD, standard deviation.