Table 3. Results of RankProd analysis-33 downregulated genes.
| ID_REF | Identifier | gene.index | RP/Rsum | FC:(class1/class2) | pfp | P.value |
|---|---|---|---|---|---|---|
| 221475_s_at | RPL15 | 104 | 3.889 | 0.67 | 7.27E−120 | 1.24E−121 |
| 203535_at | S100A9 | 103 | 4.437 | 0.71 | 1.20E−108 | 3.09E−110 |
| 209719_x_at | SERPINB3 | 3 | 6.49 | 0.46 | 2.94E−79 | 1.00E−80 |
| 200074_s_at | GUK1 | 55 | 7.095 | 0.45 | 4.17E−73 | 1.78E−74 |
| 209351_at | KRT14 | 26 | 7.505 | 0.393 | 2.33E−69 | 1.20E−70 |
| 201097_s_at | ARF4 | 11 | 8.908 | 0.32 | 2.43E−58 | 1.46E−59 |
| 217845_x_at | HIGD1A | 2 | 10.75 | 0.247 | 3.25E−47 | 2.22E−48 |
| 210413_x_at | SERPINB4 | 7 | 10.93 | 0.27 | 2.59E−46 | 1.99E−47 |
| 210835_s_at | CTBP2 | 77 | 12.68 | 0.17 | 2.39E−38 | 2.05E−39 |
| 209720_s_at | SERPINB3 | 1 | 13.56 | 0.13 | 5.96E−35 | 5.60E−36 |
| 200761_s_at | ARL6IP5 | 65 | 13.75 | 0.13 | 2.67E−34 | 2.74E−35 |
| 201619_at | PRDX3 | 69 | 14.18 | 0.10 | 7.82E−33 | 8.69E−34 |
| 206276_at | LY6D | 47 | 14.37 | 0.15 | 3.27E−32 | 3.91E−33 |
| 201098_at | COPB2 | 42 | 15.65 | 0.07 | 3.17E−28 | 4.07E−29 |
| 201653_at | CNIH1 | 87 | 16.31 | 0.067 | 2.05E−26 | 2.80E−27 |
| 211906_s_at | SERPINB4 | 8 | 16.42 | 0.003 | 3.80E−26 | 5.52E−27 |
| 202753_at | PSMD6 | 56 | 17.6 | 0.01 | 3.54E−23 | 5.45E−24 |
| 202209_at | LSM3 | 15 | 17.92 | 0.004 | 1.97E−22 | 3.20E−23 |
| 211023_at | PDHB | 9 | 17.95 | 0.018 | 2.14E−22 | 3.66E−23 |
| 221896_s_at | HIGD1A | 5 | 19.47 | 954.6 | 3.69E−19 | 6.62E−20 |
| 213164_at | SLC5A3 | 63 | 22.18 | 787.9 | 2.11E−14 | 3.97E−15 |
| 201863_at | FAM32A | 106 | 22.74 | 767.2 | 1.42E−13 | 2.78E−14 |
| 209694_at | PTS | 66 | 24.92 | 688.4 | 1.09E−10 | 2.23E−11 |
| 218845_at | DUSP22 | 10 | 26.22 | 675.4 | 3.21E−09 | 6.86E−10 |
| 203315_at | NCK2 | 80 | 27.84 | 584.5 | 1.28E−07 | 2.84E−08 |
| 213357_at | GTF2H5 | 114 | 28.09 | 612.8 | 2.09E−07 | 4.83E−08 |
| 217850_at | SNORD19B | 29 | 28.27 | 592.6 | 2.95E−07 | 7.06E−08 |
| 218283_at | SS18L2 | 12 | 28.72 | 578.6 | 6.99E−07 | 1.73E−07 |
| 203282_at | GBE1 | 14 | 31.25 | 526.7 | 5.77E−05 | 1.48E−05 |
| 212488_at | COL5A1 | 68 | 32.86 | 426.3 | 0.0005592 | 0.000148 |
| 219389_at | SUSD4 | 48 | 34.36 | 439.2 | 0.003389 | 0.000927 |
| 218115_at | ASF1B | 36 | 35.81 | 405 | 0.00481 | 0.004177 |
| 201692_at | SIGMAR1 | 117 | 36.53 | 393 | 0.00775 | 0.008063 |
Notes.
Description of Tables 2 and 3: gene.index-index of genes; RP/Rsum-computed Rank Product statistics; FC: (class1/class2)-average expression levels’ computed fold change under two conditions (upregulated class and downregulated class); pfp-estimated false positive predictions value of the genes; and P-value-estimated p-value of each gene.