Table 2.
AadA–ATP | AadA(E87Q)–ATP–dhs | AadA(E87Q)–ATP–srya | AadA–ATP–sry | |
---|---|---|---|---|
Data collectionb | ||||
Beamline | ID29 | ID23-2 | ID23-2 | ID29 |
Wavelength | 0.972 | 0.873 | 0.873 | 1.074 |
Space group | P32 | P32 | P32 | P32 |
Unit cell parameters | ||||
a, b, c (Å) | 82.3, 82.3, 79.1 | 82.9, 82.9, 79.8 | 82.5, 82.5, 79.2 | 82.7, 82.7, 79.9 |
α, β, γ (°) | 90, 90, 120 | 90, 90, 120 | 90, 90, 120 | 90, 90, 120 |
Resolution (Å)c | 36.52–1.90 (2.00–1.90) | 36.78–1.40 (1.50–1.40) | 36.58–1.73 (1.83–1.73) | 41.33–2.05 (2.10–2.05) |
Rmeas (%)c | 15.4 (90.3) | 8.2 (75.7) | 17.1 (92.8) | 11.2 (178.4) |
〈I/σ(I)〉c | 13.6 (2.52) | 11.4 (2.14) | 5.22 (0.98) | 13.43 (1.33) |
CC1/2 (%)c,d | 99.8 (90.3) | 99.8 (72.7) | 98.9 (27.3) | 99.9 (55.2) |
Completeness (%)c | 96.9 (90.2) | 100 (100) | 97.0 (99.2) | 100 (99.9) |
Redundancyc | 9.7 (9.1) | 5.2 (5.2) | 2.6 (2.6) | 10.3 (10.6) |
Refinement | ||||
Resolution (Å) | 36.52–1.9 | 36.78–1.40 | 36.57–1.73 | 41.34–2.05 |
Reflections/test set | 46,747/2,337 | 120,743/5,960 | 121,007/6,130 | 38,245/1,909 |
Rwork/Rfree (%) | 17.6/22.2 | 14.6/17.8 | 18.9/22.6 | 17.4/20.8 |
No. atoms | 4,925 | 5,377 | 5,039 | 4,544 |
Protein | 4,282 | 4,499 | 4,349 | 4,177 |
Ligand/ion | 113 | 166 | 168 | 174 |
Water | 530 | 712 | 522 | 193 |
B-factors | ||||
Protein | 31.2 | 21.6 | 29.2 | 50.1 |
Ligands | 32.8 | 19.5 | 29.8 | 60.7 |
Solvent | 38.6 | 31.1 | 35.3 | 45.2 |
r.m.s.d. from ideal | ||||
Bond lengths (Å) | 0.007 | 0.014 | 0.007 | 0.013 |
Bond angles (°) | 0.907 | 1.381 | 0.892 | 0.660 |
Ramachandran plot | ||||
Preferred (%) | 99.2 | 98.6 | 98.8 | 98.5 |
Allowed (%) | 0.6 | 1.38 | 1.2 | 1.5 |
Outliers (%) | 0.2 | 0 | 0 | 0 |
PDB code | 5g4a | 5lpa | 5luh | 6fzb |
a This structure was refined against data with separate Friedel pairs.
b Each data set was collected from a single crystal.
c Highest-resolution shell is shown in parentheses.
d CC1/2: correlation coefficient between intensity estimates from half datasets.