Table 1.
Primers used for polymerase chain reaction analysis.
Primer | Sequence (5′–3′) | PCR conditions | Size of PCR product | Reference |
---|---|---|---|---|
HEL-F | AAC GAT GAA GCT TCT AGC TTG CTA | Initial denaturation at 94 °C for 10 min; 35 cycles of 94 °C for 30 s, 56 °C for 1 min and 72 °C for 1 min; final extension of 72 °C for 10 min | 399bp | 12 |
HEL-R | GTG CTT ATT CST NAG ATA CCG TCA T | |||
glmM-F | GGA TAA GCT TTT AGG GGT GTT AGG GG | 294pb | 13 | |
glmM-R | GCT TAC TTT CTA ACA CTA ACG CGC | . | ||
cagA-F1 | GAT AAC AGG CAA GCT TTT GAG G | Initial denaturation at 94 °C for 10 min; 40 cycles of 94 °C for 30 s, 58 °C for 30 s and 72 °C for 1 min; final extension of 72 °C for 10 min | 349pb | 14,15 |
cagA-B1 | CTG CAA AAG ATT GTT TGG CAG A | |||
VA1-F | ATG GAA ATA CAA CAA ACA CAC | 259pb | 14 | |
VA1-R | CTG CTT G AATGC GCC AAAC | |||
VA1-F | ATG GAA ATA CAA CAA ACA CAC | Initial denaturation at 94 °C for 10 min; 35 cycles of 94 °C for 30 s, 60 °C for 30 s and 72 °C for 30 s; final extension of 72 °C for 10 min. | 286pb | 14 |
VA1-R | CTG CTT G AATGC GCC AAAC | |||
VAG-F | CAA TCT GTC CAA TCA AGC GAG | 570pb | 14 | |
VAG-R | GCG TCA AAT AAT T CCA AGG | |||
VAG-F | CAA TCT GTC CAA TCA AGC GAG | 645pb | 14 | |
VAG-R | GCG TCA AAT AAT T CCA AGG | 14 |