Table 1.
PDB IDs of Systems Employed in This Study
| PDB IDa | Binding site topography | Ligand | Number of carbohydrate residues |
|---|---|---|---|
| 1OP3 (1OM3) | Canyon | DManpa1–2DManpa1-ROH | 2 |
| 1M7D (1M71) | Canyon | LRhapa1–3(2-deoxy)LRhapa1–3GlcpNAcpb-OMe | 3 |
| 1MFA | Crater | DAbepa-13[Dgalpa1–2]DManpa-OMe | 3 |
| 1CLY | Valley | LFucpa1–2DGalpb1–4[LFucpa1−3]DGlcpNAca-OMe | 4 |
| 1S3K | Valley | LFucpa1–2DGalpb1–4[LFucpa1–3]DGlcNAcb1-ROH | 4 |
| 1UZ8 (1UZ6) | Canyon | DGalpb1–4[LFucpa1–3]DGlcpNAcb1-OME | 3 |
| 1M7I (1M71) | Canyon | LRhaap1–2LRhapa1–3LRhapa1−3DGlcpNAcb1–2LRhapa-OMe | 5 |
| 1MFB | Crater | DAbepa1–3[DGalpa1–2DManpa1–4LRhapa1–3DGalpa1–2]DManpa1–4LRhapa1-ROH | 7 |
| 3TV3 | Canyon | DManpa1–2DManpa1–6[DMAnpa1–3]DManpa1–6DManpa1–3DManpa1–2DManpa1–2DManpa-OMe | 8 |
| 3C6S (3C5S) | Crater | DGlcpa1–4[DGlcpa1–4[LRhapa1–2LRhapa1–3]LRhapa1–3DGlcpNAcb1–2LRhapa1–2LRhapa1–3] LRhapa1–3DGlcpNAcb1– 2LRhapx | 11 |
a
PDB IDs in parentheses represent the apo structure.