Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Antibody | Mouse Anti-alpha-Tubulin Monoclonal Antibody, Unconjugated, Clone DM1A |
Sigma-Aldrich | T9026; RRID:AB_477593 |
(1:500) |
| Antibody | Anti-beta-Catenin antibody produced in rabbit |
Sigma-Aldrich | C2206; RRID:AB_476831 |
(1:300) |
| Antibody | Anti-Histone, H1 + core proteins, clone F152.C25.WJJ antibody |
Millipore | MABE71; RRID:AB_10845941 |
(1:300) |
| Antibody | anti-NvaPKC custom peptide antibody produced in rabbit |
Bethyl labs; Salinas-Saavedra et al. (2015) |
Stored at MQ Martindale's lab; (1:100) |
|
| Antibody | anti-NvLgl custom peptide antibody produced in rabbit |
Bethyl labs; Salinas-Saavedra et al. (2015) |
Stored at MQ Martindale's lab; (1:100) |
|
| Antibody | anti-NvPar-1 custom peptide antibody produced in rabbit |
Bethyl labs; Salinas-Saavedra et al. (2015) |
Stored at MQ Martindale's lab; (1:100) |
|
| Antibody | anti-NvPar-6 custom peptide antibody produced in rabbit |
Bethyl labs; Salinas-Saavedra et al. (2015) |
Stored at MQ Martindale's lab; (1:100) |
|
| Antibody | Goat anti-Mouse IgG Secondary Antibody, Alexa Fluor 568 |
Thermo Fisher Scientific | A-11004; RRID:AB_2534072 |
(1:250) |
| Antibody | Goat anti-Rabbit IgG Secondary Antibody, Alexa Fluor 647 |
Thermo Fisher Scientific | A-21245; RRID:AB_2535813 |
(1:250) |
| Antibody | Sheep Anti-Digoxigenin Fab fragments Antibody, AP Conjugated, Roche |
Roche | 11093274910; RRID:AB_514497 |
|
| Other | Alexa Fluor 488 Phalloidin | Thermo Fisher Scientific | A12379; RRID:AB_2315147 |
(1:200) |
| Other | Texas Red Streptavidin | Vector Laboratories | SA-5006, RRID:AB_2336754 |
(1:200) |
| Other | DAPI (4',6-Diamidino- 2-Phenylindole, Dihydrochloride) |
Thermo Fisher Scientific | D1306; RRID:AB_2629482 |
(0.1 µg/µl) |
| Chemical compound, drug |
Protein kinase Cζ pseudosubstrate, myristoyl trifluoroacetate salt |
Sigma-Aldrich | P1614 | |
| Chemical compound, drug |
1-Azakenpaullone | Sigma-Aldrich | A3734 | |
| Chemical compound, drug |
Biotinylated Dextran Amine-Texas Red |
Vector Laboratories | SP-1140; RRID:AB_2336249 |
|
| Chemical compound, drug |
Dextran, Alexa Fluor 488; 10,000 MW, Anionic, Fixable |
Thermo Fisher Scientific | D22910 | |
| Chemical compound, drug |
Dextran, Alexa Fluor 555; 10,000 MW, Anionic, Fixable |
Thermo Fisher Scientific | D34679 | |
| Chemical compound, drug |
Dextran, Alexa Fluor 647; 10,000 MW, Anionic, Fixable |
Thermo Fisher Scientific | D22914 | |
| Chemical compound, drug |
Dextran, Cascade Blue, 10,000 MW, Anionic, Lysine Fixable |
Thermo Fisher Scientific | D1976 | |
| Deposited Data |
Nematostella vectensis
genome assembly 1.0 |
JGI | https://genome.jgi.doe.gov/Nemve1/Nemve1.home.html | |
| Biological sample | Nematostella vectensis | Whitney Laboratory for Marine Bioscience, FL, USA. |
RRID:SCR_005153 | |
| Sequence-based reagent |
Genomic PCR Nvpar-6 and
dnNvpar-6: F-AAAACCAC CATCAGCCGAGTCA; R-TATTGATAGAATACCAGTCTCA |
NEMVEDRAFT _v1g233358 |
||
| Sequence-based reagent |
sgRNAs Nvpar-6:
1-GGATGTTGCCGACTCGCAGT; 2-GGAGAAGGCGAACTCGTCTG; 3-GGATAACCCTGTGCCAGTCA |
CRISPRevolution sgRNA; Synthego |
NEMVEDRAFT _v1g233358 |
|
| Sequence-based reagent |
dnNvpar-3: F-ATGATGAAGGTTGTAGT;
R-TGCGCCCGATTCGAATCCATCT |
NEMVEDRAFT _v1g240248 |
||
| Sequence-based reagent |
sgRNAs Nvpar-3:
1-GGGTGTTCGAGGGACGCGAT; 2- GGGCAGGTTTATCCCGAAGG; 3- ACCAACGAUCUAGAUCCAGU |
CRISPRevolution sgRNA; Synthego |
NEMVEDRAFT _v1g240248 |
|
| Sequence-based reagent |
Genomic PCR Nvpar-3:
F-GTAGACGGGACTGGTTTGGA; R-AGGGACAGGTTGCTCCTTTT |
NEMVEDRAFT _v1g240248 |
||
| Sequence-based reagent |
dnNvpar-1:
F-AATATAAACTATGAACTTAACG; R-TTAAAGTTTTAATTCATTTGCA |
NEMVEDRAFT _v1g 139527 |
||
| Sequence-based reagent |
sgRNAs Nvsnail-A:
2-GGGGCCGGTAATGACGCGCG; 3-GGCGTAGAGTCACACCGCAA; 4-GGCGATGATATCGAGCTCGG; 5-GGGCATCTTGAGTGCACCCA |
CRISPRevolution sgRNA; Synthego |
NEMVEDRAFT _v1g240686 |
|
| Sequence-based reagent |
sgRNAs Nvsnail-A:
1-GGGCTCTCTTGCTCCGTAAC; 6-GGGTTTCCTGGCGCTGGGAT |
CRISPRevolution Modified sgRNA; Synthego |
NEMVEDRAFT _v1g240686 |
|
| Sequence-based reagent |
Genomic PCR Nvsnail-A (full length):
F-ATGCCCCGCTCGTTTCTAG; R-TCCTTGTGACGGGCAGCC |
NEMVEDRAFT _v1g240686 |
||
| Sequence-based reagent |
sgRNAs Nvsnail-B:
1-GGAAGAGGATGTGAGGTTTT; 2-GAGATGATATTAGGCTGGTG; 4-GAAAAGCTGTACGACTCCTT; 5-GGGCATCTTGAGAGCGCCCA |
CRISPRevolution sgRNA; Synthego |
NEMVEDRAFT _v1g236363 |
|
| Sequence-based reagent |
sgRNAs Nvsnail-B:
3-GGGTGAAGACTAAGACAGAG; 6-GGGCGATGAATCGTGTTTAA |
CRISPRevolution Modified sgRNA; Synthego |
NEMVEDRAFT _v1g236363 |
|
| Sequence-based reagent |
Genomic PCR Nvsnail-B (full length):
F-ATGCCGAGGTCCTTCCTGG; R-GCAGAGATTTTGCCGACACAT |
NEMVEDRAFT _v1g236363 |
||
| Recombinant DNA reagent |
pSPE3-mVenus | Roure et al. (2007) | Gateway vector | |
| Recombinant DNA reagent |
pSPE3-mCherry | Roure et al. (2007) | Gateway vector | |
| Recombinant DNA reagent |
pSPE3-Nvpar-6-mVenus | Salinas-Saavedra et al. (2015) | ||
| Recombinant DNA reagent |
pSPE3-Nvpar-3-mVenus | Salinas-Saavedra et al. (2015) | ||
| Recombinant DNA reagent |
Nvß-catenin expression
constructs |
Wikramanayake et al.
(2003); Röttinger et al., 2012 |
||
| Recombinant DNA reagent |
Nvsnail-A backbone to generate expression constructs |
Magie et al. (2007) | ||
| Software, algorithm |
Fiji (ImageJ) | NIH | http://fiji.sc | |
| Software, algorithm |
Imaris 7.6.4 | Bitplane Inc. | ||
| Software, algorithm |
CRISPRscan | Moreno-Mateos et al. (2015) | http://www.crisprscan.org/ | |
| Software, algorithm |
SPSS | IBM |