Table 1.
Gene involved in stomata development in N. colorata compared with other representative plant
| Gene name | Symbol | A. thaliana | K. laxiflora | N. nucifera | O. sativa | S. polyrhiza | N. colorata | A. trichopoda | G. biloba |
|---|---|---|---|---|---|---|---|---|---|
| Differentiation genes | |||||||||
| SPEECHLESS | SPCH | AT5G53210 | Kalax.0066s0097 Kalax.0943s0016 Kalax.0277s0021 |
NNU 010414 NNU 013503 |
LOC Os06g33450 LOC Os02g15760 |
Spipo6G0039300 | NC1G0180400 | Atr|scaffold00015.95 | Gb 32351 |
| MUTE | MUTE | AT3G06120 | Kalax.0004s0103 Kalax.0418s0025 Kalax.0268s0032 Kalax.0539s0032 |
NNU 007035 | LOC Os05g51820 | NC2G0006530 | Atr|scaffold00025.64 | ||
| FAMA | FAMA | AT3G24140 | Kalax.0693s0014 Kalax.1863s0001 Kalax.0693s0015 Kalax.0693s0014 |
NNU 012009 NNU 025179 |
LOC Os05g50900 | NF | NC3G0207550 | Atr|scaffold00089.12 | |
| SCREAM/ICE1 | SCRM | AT3G26744 | Kalax.0347s0049 Kalax.0029s0087 Kalax.0801s0007 Kalax.0234s0011 |
NNU 003962 NNU 003217 |
LOC Os11g32100 LOC Os01g70310 |
Spipo4G0062100 Spipo0G0129300 |
NC2G0294460 NC7G0236530 |
Atr|scaffold00016.130 | Gb 18877Gb 40304 |
| SCREAM2 | SCRM2 | AT1G12860 | |||||||
| FOUR LIPS | FLP | AT1G14350 | Kalax.0757s0004 Kalax.0556s0006 Kalax.0031s0030 Kalax.0089s0020 |
NNU 022886 NNU 000781 |
LOC Os07g43420 | Spipo0G0157900 | NC2G0034590 | Atr|scaffold00010.370 | Gb 06045 |
| MYB88 | MYB88 | AT2G02820 | |||||||
| HOMEODOMAIN GLABROUS2 | HDG2 | AT1G05230 | Kalax.0393s0043 Kalax.0069s0102 Kalax.1016s0007 Kalax.1527s0001 |
NNU 019425 NNU 014296 |
LOC Os04g53540 LOC Os08g08820 LOC Os08g04190 |
Spipo7G0015400 | NC1G0306950 | Atr|scaffold00004.265 | Gb 18862Gb 16030 |
| Spacing and patterning genes | |||||||||
| EPIDERMAL PATTERNING FACTOR1 | EPF1 | AT2G20875 | Kalax.0168s0064 Kalax.1136s0002 Kalax.0140s0018 Kalax.0421s0001 Kalax.0001s0052 Kalax.0002s0022 |
NNU 024753 | LOC Os04g54490 LOC Os04g38470 |
Spipo14G0058800 | NC1G0135060 NC11G0122180 |
Atr|scaffold00003.277 | Gb 37555Gb 00388Gb 38060 |
| EPIDERMAL PATTERNING FACTOR2 | EPF2 | AT1G34245 | Kalax.0149s0034 Kalax.0314s0026 |
NNU 010187 | Spipo15G0006400 | NF | Atr|scaffold00010.278 | ||
| STOMAGEN/EPF-LIKE9 | EPFL9 | AT4G12970 | Kalax.0185s0039 Kalax.0025s0112 Kalax.0033s0049 Kalax.0297s0025 |
NNU 022462 NNU 008635 |
LOC Os01g68598 | Spipo7G0057500 | NC3G0208820 | Atr|scaffold00020 | Gb 18813 |
| CHALLAH/EPF-LIKE6 | EPFL6 | AT2G30370 | Kalax.0093s0085 Kalax.0322s0055 |
NF | LOC Os01g60900 LOC Os05g39880 |
Spipo29G0014100 | NC3G0226990 NC4G0199650 |
Atr|scaffold00065.47 | Gb 05485 |
| ERECTA | ER | AT2G26330 | Kalax.0387s0036 Kalax.0284s0052 |
NNU 018228 NNU 010627 | LOC Os06g10230 LOC Os02g53720 |
Spipo15G0047400 | NC10G0163170 | Atr|scaffold00024.267 | Gb 26881 |
| ERECTA-LIKE1 | ERL1 | AT5G62230 | Kalax.0858s0013 Kalax.1180s0007 |
NNU 001410 | LOC Os06g03970 | Spipo11G0029800 | NC9G0271680 | Atr|scaffold00069.214 | Gb 15512 |
| ERECTA-LIKE2 | ERL2 | AT5G07180 | NNU 020430 | ||||||
| TOO MANY MOUTHS | TMM | AT1G80080 | Kalax.0093s0024 Kalax.0058s0095 |
NNU 003757 | LOC Os01g43440 | Spipo18G0010300 | NC4G0153390 | Atr|scaffold00051.26 | Gb 10165 |
| STOMATAL DENSITY AND DISTRIBUTION1 | SDD1 | AT1G04110 | Kalax.0525s0015 Kalax.0155s0004 |
NNU 010999 | LOC Os03g04950 | Spipo1G0013100 | NC4G0239300 | Atr|scaffold00039.113 | Gb 35657 |
| CO2 RESPONSE SECRETED PROTEASE | CRSP | AT1G20160 | NF | NNU 013210 | LOC Os09g30458 | Spipo3G0019800 | NC2G037260 | Atr|scaffold00152.21 | Gb 39463 |
| YODA | YDA | AT1G63700 | Kalax.0027s0088 Kalax.0305s0041 Kalax.0021s0011 Kalax.0119s0027 |
NNU 019513 NNU 006681 |
LOC Os02g44642 LOC Os04g47240 |
Spipo24G0030800 | NC4G0020020 NC12G0094120 |
Atr|scaffold00009.178 | Gb 12558 |
| MPK3 | MPK3 | AT3G45640 | Kalax.0014s0191 Kalax.0055s0143 |
NNU 009572 NNU 005597 |
LOC Os03g17700 | NF | NC2G0053420 | Atr|scaffold00023.237 | Gb 14122 |
| MPK6 | MPK6 | AT2G43790 | Kalax.0019s0087 Kalax.0022s0025 Kalax.0082s0002 Kalax.0133s0041 |
NF | LOC Os06g06090 | Spipo14G0031100 | NF | Atr|scaffold00058.238 | Gb 26499Gb 15256 |
| MKK4 | MKK4 | AT1G51660 | Kalax.0510s0006 Kalax.0445s0039 Kalax.0283s0053 Kalax.0104s0058 |
NNU 012790 | LOC Os02g54600 LOC Os06g09180 |
Spipo12G0053200 Spipo28G0018300 |
NC3G0229970 | Atr|scaffold00011.127 Atr|scaffold00011.128 |
Gb 36141 |
| MKK5 | MKK5 | AT3G21220 | |||||||
| MKK7 | MKK7 | AT1G18350 | Kalax.0543s0017 Kalax.0216s0025 Kalax.0039s0095 Kalax.1433s0007 |
NNU 016426 NNU 000259 |
LOC Os03g12390 | Spipo15G0037300 | NC8G0217780 NC10G0164550 |
Atr|scaffold00176.2 | Gb 41213Gb 20818 |
| MKK9 | MKK9 | AT1G73500 | |||||||
| ARABIDOPSIS PROTEIN PHOPHATASE 2C | AP2C3 | AT2G40180 | Kalax.0107s0048 Kalax.0170s0065 Kalax.0441s0007 Kalax.0527s0028 |
NNU 012318 NNU 005774 |
LOC Os03g18150 | Spipo22G0031600 Spipo23G0037200 |
NF | Atr|scaffold00065.64 Atr|scaffold00078.152 Atr|scaffold00007.121 |
Gb 40834Gb 22266 |
| Polarity and division asymmetry genes | |||||||||
| PANGLOSS1 | PAN1 | AT2G42290, AT3G57830 | Kalax.0222s0039 Kalax.0637s0020 |
NNU 012890 | LOC Os08g39590 | Spipo12G0035200 | NC1G0088630 | Atr|scaffold00022.305 | Gb 28844 |
| PANGLOSS2 | PAN2 | AT4G20940 | Kalax.0016s0247 Kalax.0114s0005 |
NNU 026348 | LOC Os07g05190 | Spipo32G0009300 Spipo0G0142000 |
NC14G0281210 | Atr|scaffold00175.33 | Gb 30406Gb 18587 |
| RHO-RELATED PROTEIN FROM PLANTS 9 | ROP9 | AT4G28950 | Kalax.0192s0051 Kalax.0015s0042 Kalax.1214s0006 |
NNU 005916 NNU 003451 |
LOC Os05g43820 | Spipo26G0003200 | NC6G0252910 | Atr|scaffold00002.129 | Gb 09833 |
| BREAKING OF ASYMMETRY IN THE STOMATAL LINEGAE | BASL | At5g60880 | Kalax.0236s0002 Kalax.1000s0001 |
NNU 008250 | LOC Os04g39240 | NF | NF | Atr|scaffold00006.135 | Gb 36330 |
| POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND REDISTRIBUTION | POLAR | AT4G31805 | Kalax.0020s0126 Kalax.0107s0095 Kalax.0250s0038 Kalax.0530s0021 |
NNU 019396NNU 013094 | LOC Os06g08520 LOC Os02g55190 |
Spipo10G0014700 | NF | Atr|scaffold00065.195 | Gb 00304 |
| Mitosis and cytokinesis genes | |||||||||
| STOMATAL CYTOKINESIS DEFECTIVE 1 | SCD1 | AT1G49040 | Kalax.0061s0068 Kalax.0190s0062 |
NNU 012674 | LOC Os01g39380 | Spipo21G0025200 | NC3G0202830 | Atr|scaffold00104.16 | Gb 36258 |
| Hormone and environmental signalling genes | |||||||||
| CRYPTOCHROME | CRY1 | AT4G08920 | Kalax.0428s0010 Kalax.1365s0004 Kalax.0290s0014 Kalax.0239s0053 |
NNU 001876 NNU 015266 |
LOC Os04g37920 LOC Os02g36380 |
Spipo15G0011900 | NC8G0218290 | Atr|scaffold00038.124 | Gb 13122 |
| CRY2 | AT1G04400 | Kalax.0094s0015 Kalax.0075s0050 |
NNU 010890 NNU 018834 |
LOC Os02g41550 | Spipo1G0003600 | NC12G0249420 | Atr|scaffold00148.69 | Gb 13122 | |
| PHYTOCHROME | PHYA | AT1G09570 | Kalax.0106s0002 Kalax.0005s0079 Kalax.0038s0184 Kalax.0172s0035 |
NNU 026354 | LOC Os03g51030 | Spipo6G0014200 | NC10G0166490 | Atr|scaffold00045.165 | Gb 21967 |
| PHYB | AT2G18790 | Kalax.0613s0014 Kalax.0391s0019 Kalax.0996s0003 |
NNU 014452 | LOC Os03g19590 | Spipo6G0031800 | NC5G0160900 | Atr|scaffold00003.45 | Gb 17897 | |
| PYTOCHROME-INTERACTING FACTOR 4 | PIF4 | AT2G43010 | Kalax.0495s0020 Kalax.0759s0011 |
NNU 026428 | LOC Os03g43810 LOC Os07g05010 LOC Os03g56950 |
Spipo13G0048400 | NC10G0166270 | Atr|scaffold00039.9 | Gb 07156 |
| CONSTITUTIVE PHOTOMORPHOGENIC 1 | COP1 | AT2G32950 | Kalax.0049s0041 Kalax.0049s0041 |
NNU 005078 NNU 015709 |
LOC Os02g53140 | Spipo31G0000500 | NC1G0178350 | Atr|scaffold00074.24 | Gb 15627 |
| CONSTITUTIVE PHOTOMORPHOGENIC 10 | COP10 | AT3G13550 | Kalax.0340s0003 Kalax.0021s0072 |
NNU 019762 | LOC Os07g38940 | Spipo2G0063200 | NC1G0193740 | Atr|scaffold00061.43 | Gb 07763 |
| HIGH CARBON DIOXIDE | HIC1 | AT2G46720 | Kalax.0018s0006 Kalax.0090s0007 Kalax.1015s0012 Kalax.0013s0142 Kalax.1015s0014 |
NNU 006085 NNU 003630 |
LOC Os05g49900 LOC Os02g11070 LOC Os06g39750 |
Spipo14G0001700 Spipo21G0006400 |
NC6G0254440 NC1G0129310 |
Atr|scaffold00052.41 | Gb 23820 |
| BRI SUPPRESSOR1 | BSU1 | AT1G03445 | Kalax.0084s0077 Kalax.1286s0001 Kalax.0045s0074 Kalax.0289s0053 |
NNU 001649 NNU 024344 |
LOC Os05g05240 | Spipo6G0007500 | NC1G0193170 | Atr|scaffold00004.204 | Gb 36990 |
| BRASSINOSTEROID INSENSTIVIE 2 | BIN2 | AT4G18710 | Kalax.0092s0006 Kalax.0164s0037 Kalax.1441s0002 Kalax.0375s0036 Kalax.0283s0042 Kalax.0104s0069 |
NNU 025519 | LOC Os01g10840 LOC Os05g11730 LOC Os02g14130 LOC Os06g35530 |
Spipo18G0019800 Spipo14G0030500 |
NC9G0114290 NC13G0028550 |
Atr|scaffold00170.9 | Gb 21469 |
NF not found