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. 2018 Aug 1;4:27. doi: 10.1038/s41540-018-0063-2

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — Individual treatment prediction for each CD patient. For the prediction of treatment metabolites a, single metabolic models of microbes for each patient were optimized for the production of the target metabolites with iterative dietary additions. b Shows broader categories of the predicted metabolites and c shows the response (metabolite increase of 25%) of each patient in purple. d, e show the relative abundance and metabolite concentrations