Table 2. Average Quality of the 16 Predicted Structures for Cases When Target-Template Sequence Identity was Higher Than 40% (Intracluster Structures)a.
| homology modeling algorithm | Cα-RMSD, Å | GDT-HA, % | Cα-RMSD, Å (TM part) | GDT-HA, % (TM part) |
|---|---|---|---|---|
| I-TASSER (MP-T align.) | 1.350 (0.584–2.422) | 75.60 (59.26–90.81) | 1.137 (0.551–2.059) | 76.80 (59.73–91.82) |
| I-TASSER (AlignMe align.) | 1.342 (0.779–2.061) | 75.97 (62.11–88.32) | 1.206 (0.568–1.977) | 77.06 (63.25–89.53) |
| I-TASSER (MUSTER align.) | 1.440 (0.958–2.293) | 72.67 (56.47–83.05) | ||
| Medeller (MP-T align.) | 2.234 (0.680–4.000) | 80.52 (70.92–86.75) | 0.938 (0.639–1.702) | 83.24 (72.03–88.49) |
| Medeller (AlignMe align.) | 2.154 (0.769–4.657) | 80.52 (70.12–85.46) | 1.079 (0.674–1.736) | 82.73 (71.21–88.07) |
| RosettaCM (MP-T align.) | 1.901 (0.979–3.048) | 63.52 (52.41–73.61) | 1.571 (0.974–2.783) | 65.78 (52.41–73.95) |
| RosettaCM (AlignMe align.) | 2.054 (1.199–3.787) | 63.87 (54.38–73.03) | 1.752 (1.085–3.702) | 65.04 (53.89–74.89) |
a
The range of the corresponding values is given in brackets.