Table 3.
Cycling Parameters * | PCR Program for Lactobacillus Genus | PCR Program for Bifidobacterium Genus | Multiplex Program for L. rhamnosus, L. acidophilus, B. bifidum | Duplex Program for L. casei and L. reuteri | PCR Program for B. coagulans | PCR Program for E. faecium | PCR Program for E. coli |
---|---|---|---|---|---|---|---|
Denaturation | 30 s at 94 °C | 30 s at 94 °C | 45 s at 94 °C | 30 s at 94 °C | 30 s at 94 °C | 60 s at 94 °C | 30 s at 94 °C |
Annealing | 30 s at 55 °C | 60 s at 53 °C | 45 s at 63 °C | 30 s at 55 °C | 30 s at 60 °C | 60 s at 54 °C | 30 s at 52 °C |
Extension | 30 s at 72 °C | 2 min at 72 °C | 60 s at 72 °C | 30 s at 72 °C | 60 s at 72 °C | 60 s at 72 °C | 60 s at 72 °C |
Number of cycles | 20 | 35 | 30 | 30 | 30 | 40 | 35 |
* Initial denaturation and final extension is 15 min at 95 °C and 7 min at 72 °C respectively for all amplifications.