Table 3.
QTL namea | SNP markerb | Chrc | Posd | Rangee | DRf | PBon-Holmg | Effecth | R2vali (%) | Candidate genej | Literaturej |
---|---|---|---|---|---|---|---|---|---|---|
QHEI.WM-800.1B | CAP8_c5043_190 | 1B | 117.8 | 117.8 | 39 | 6.70E-05 | 3.8 | 0.8 | ||
QHEI.WM-800.1D | BS00063511_51 | 1D | 167.1 | 167.1 | 44 | 9.24E-05 | −3.9 | 1.4 | [16] | |
QHEI.WM-800.2A | Excalibur_c20439_825 | 2A | 148.8 | 148.8 | 42 | 6.69E-05 | − 2.4 | 1.0 | ||
QHEI.WM-800.2D | Excalibur_rep_c67599_2154 | 2D | 97.1 | 97.1 | 35 | 9.37E-06 | −3.5 | 1.3 | Ppd-D1 | [89] |
QHEI.WM-800.3A | IAAV5729 | 3A | 61.1 | 61.1 | 41 | 5.01E-05 | −2.9 | 1.3 | [26] | |
QHEI.WM-800.4A.a | wsnp_Ex_c5487_9686018 | 4A | 43.2 | 43.2 | 42 | 7.25E-05 | 2.8 | 0.8 | ||
QHEI.WM-800.4A.b | Kukri_c48199_102 | 4A | 49.0 | 49.0 | 36 | 4.76E-05 | − 2.8 | 1.0 | ||
QHEI.WM-800.4A.c | wsnp_Ex_c12725_2021270 | 4A | 147.2 | 147.2 | 35 | 4.69E-05 | −4.5 | 0.5 | ||
QHEI.WM-800.4B.a | TG0010a | 4B | 56.0 | 56.0 | 100 | 1.25E-47 | 12.8 | 6.7 | Rht-B1 | [74] |
QHEI.WM-800.4B.b | BS00030843_51 | 4B | 62.9 | 62.9 | 35 | 3.97E-05 | −2.8 | 0.6 | ||
QHEI.WM-800.4D | TG0011a | 4D | 69.2 | 69.2 | 99 | 4.17E-20 | −14.9 | 21.5 | Rht-D1 | [74] |
QHEI.WM-800.5A | RAC875_c30711_544 | 5A | 67.0 | 67.0 | 100 | 1.38E-07 | 5.3 | 5.5 | ||
QHEI.WM-800.6A | tplb0047k12_1370 | 6A | 79.1 | 79.1 (2) | 47 | 1.44E-16 | 5.1 | 4.8 | Rht24 | [76] |
QHEI.WM-800.7B | RAC875_c76528_296 | 7B | 155.4 | 155.4–159.7 (2) | 51 | 2.45E-05 | −4.3 | 0.8 | ||
59.9 |
aQTL name including trait, population and chromosome information
bSNP marker name [36]
cChromosome of SNP marker [36]
dGenetic position of SNP marker [36]
eRange of QTL in cM including number of significant SNPs (in brackets) within the range
fDetection rate (DR) of SNP by cross validation
gBonferroni corrected p-value of SNP marker
hEffect of homozygous Julius allele (in cm) compared to non-Julius allele
iCross-validated proportion of explained genetic variance of validation set
jCandidate genes with references