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. Author manuscript; available in PMC: 2018 Aug 1.
Published in final edited form as: Cell Syst. 2018 Feb 14;6(2):216–229.e15. doi: 10.1016/j.cels.2018.01.011

KEY RESOURCES TABLE.

REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and Virus Strains
PY79 BGSC 1A747 PY79
PY79; ppsB::PtrpE-mCherry PhleoR (Locke et al., 2011) JP1
JP1;ytvA::NeoR This paper JP2
JP2;sacA::PB-yfp CmR This paper JP3
JP2;sacA::PM-yfp CmR This paper JP4
JP2;sacA::PW-yfp CmR This paper JP5
JP2;sacA::PX-yfp CmR This paper JP6
JP2;sacA::PD-yfp CmR This paper JP7
JP2;sacA::PL-yfp CmR This paper JP8
JP2;sacA::PY-yfp CmR This paper JP9
JP2;sacA::PA-yfp CmR This paper JP10
JP3;rsbU-rsbX::TetR This paper, (Locke et al., 2011) JP11
JP4; sigM::TetR This paper, (Luo and Helmann, 2009) JP12
JP4; sigW::ErmR This paper, (Luo and Helmann, 2009) JP13
JP6;sigX::SpectR This paper, (Cao and Helmann, 2002) JP14
sigD::TetR (Helmann et al., 1988; Steinmetz and Richter, 1994) JP15
JP7; sigD::TetR This paper, (Helmann et al.,1988; Steinmetz and Richter, 1994) JP16
JP1; sacA::PL-yfp CmR This paper, (Wiegeshoff et al., 2006) JP17
JP17;sigL::KanR This paper JP18
JP1; sacA::PY-yfp CmR This paper JP19
JP19;sigY::KanR This paper, (Cao et al., 2003) JP20
JP3;amyE::PB-3Xcfp SpectR This paper JP21
JP3;amyE::PM-3Xcfp SpectR This paper JP22
JP3;amyE::PW-3Xcfp SpectR This paper JP23
JP3;amyE::PX-3Xcfp SpectR This paper JP24
JP3;amyE::PD-3Xcfp SpectR This paper JP25
JP4;amyE::PB-3Xcfp SpectR This paper JP26
JP4;amyE::PM-3Xcfp SpectR This paper JP27
JP4;amyE::PW-3Xcfp SpectR This paper JP28
JP4;amyE::PX-3Xcfp SpectR This paper JP29
JP4;amyE::PD-3Xcfp SpectR This paper JP30
JP5;amyE::PB-3Xcfp SpectR This paper JP31
JP5;amyE::PM-3Xcfp SpectR This paper JP32
JP5;amyE::PW-3Xcfp SpectR This paper JP33
JP5;amyE::PX-3Xcfp SpectR This paper JP34
JP5;amyE::PD-3Xcfp SpectR This paper JP35
JP6;amyE::PB-3Xcfp SpectR This paper JP36
JP6;amyE::PM-3Xcfp SpectR This paper JP37
JP6;amyE::PW-3Xcfp SpectR This paper JP38
JP6;amyE::PX-3Xcfp SpectR This paper JP39
JP6;amyE::PD-3Xcfp SpectR This paper JP40
JP7;amyE::PB-3Xcfp SpectR This paper JP41
JP7;amyE::PM-3Xcfp SpectR This paper JP42
JP7;amyE::PW-3Xcfp SpectR This paper JP43
JP7;amyE::PX-3Xcfp SpectR This paper JP44
JP7;amyE::PD-3Xcfp SpectR This paper JP45
JJB213; rsbU-rsbX::TetR This paper JP46
JP1 ; rsbU-rsbX::TetR This paper JP47
JP47; amyE::Phyperspank-sigB SpectR This paper JP48
JP48; pyrD::PB-cfp KanR This paper JP49
JP49; sacA::PW-yfp CmR This paper JP50
JP49; sacA::PD-yfp CmR This paper JP51
JP50; hag::ErmR This paper, (Koo et al., 2017) JP52
JP51; hag::ErmR This paper, (Koo et al., 2017) JP53
JP21;hag::ErmR This paper, (Koo et al., 2017) JP54
JP26;hag::ErmR This paper, (Koo et al., 2017) JP55
JP31;hag::ErmR This paper, (Koo et al., 2017) JP56
JP36;hag::ErmR This paper, (Koo et al., 2017) JP57
JP41;hag::ErmR This paper, (Koo et al., 2017) JP58
JP27;hag::ErmR This paper, (Koo et al., 2017) JP59
JP32;hag::ErmR This paper, (Koo et al., 2017) JP60
JP37;hag::ErmR This paper, (Koo et al., 2017) JP61
JP42;hag::ErmR This paper, (Koo et al., 2017) JP62
JP33;hag::ErmR This paper, (Koo et al., 2017) JP63
JP38;hag::ErmR This paper, (Koo et al., 2017) JP64
JP43;hag::ErmR This paper, (Koo et al., 2017) JP65
JP39;hag::ErmR This paper, (Koo et al., 2017) JP66
JP44;hag::ErmR This paper, (Koo et al., 2017) JP67
JP45;hag::ErmR This paper, (Koo et al., 2017) JP68
JP2; amyE::Phyperspank-yfp SpectR This paper JP69
JP69; hag::ErmR This paper, (Koo et al., 2017) JP70
JP3; rsbU-rsbX::TetR This paper, (Locke et al., 2011) JP71
JP4; rsbU-rsbX::TetR This paper, (Locke et al., 2011) JP72
JP5; rsbU-rsbX::TetR This paper, (Locke et al., 2011) JP73
JP6; rsbU-rsbX::TetR This paper, (Locke et al., 2011) JP74
JP7; rsbU-rsbX::TetR This paper, (Locke et al., 2011) JP75
JP8; rsbU-rsbX::TetR This paper, (Locke et al., 2011) JP76
JP9; rsbU-rsbX::TetR This paper, (Locke et al., 2011) JP77
JP3; sigD::TetR This paper, (Helmann et al.,1988; Steinmetz and Richter, 1994) JP78
JP4; sigD::TetR This paper, (Helmann et al.,1988; Steinmetz and Richter, 1994) JP79
JP5; sigD::TetR This paper, (Helmann et al.,1988; Steinmetz and Richter, 1994) JP80
JP6; sigD::TetR This paper, (Helmann et al.,1988; Steinmetz and Richter, 1994) JP81
JP7; sigD::TetR This paper, (Helmann et al.,1988; Steinmetz and Richter, 1994) JP82
JP8; sigD::TetR This paper, (Helmann et al.,1988; Steinmetz and Richter, 1994) JP83
JP9; sigD::TetR This paper, (Helmann et al.,1988; Steinmetz and Richter, 1994) JP84
JP3; sigL::KanR This paper, (Wiegeshoff et al., 2006) JP85
JP4; sigL::KanR This paper, (Wiegeshoff et al., 2006) JP86
JP5;sigL::KanR This paper, (Wiegeshoff et al., 2006) JP87
JP6;sigL::KanR This paper, (Wiegeshoff et al., 2006) JP88
JP7;sigL::KanR This paper, (Wiegeshoff et al., 2006) JP89
JP8;sigL::KanR This paper, (Wiegeshoff et al., 2006) JP90
JP9;sigL::KanR This paper, (Wiegeshoff et al., 2006) JP91
JP3;sigM::TetR This paper, (Luo and Helmann, 2009) JP92
JP4;sigM::TetR This paper, (Luo and Helmann, 2009) JP93
JP5;sigM::TetR This paper, (Luo and Helmann, 2009) JP94
JP6;sigM::TetR This paper, (Luo and Helmann, 2009) JP95
JP7;sigM::TetR This paper, (Luo and Helmann, 2009) JP96
JP8;sigM::TetR This paper, (Luo and Helmann, 2009) JP97
JP9;sigM::TetR This paper, (Luo and Helmann, 2009) JP98
JP4; sigW::ErmR This paper, (Luo and Helmann, 2009) JP99
JP4; sigW::ErmR This paper, (Luo and Helmann, 2009) JP100
JP5; sigW::ErmR This paper, (Luo and Helmann, 2009) JP101
JP6; sigW::ErmR This paper, (Luo and Helmann, 2009) JP102
JP7; sigW::ErmR This paper, (Luo and Helmann, 2009) JP103
JP8; sigW::ErmR This paper, (Luo and Helmann, 2009) JP104
JP9; sigW::ErmR This paper, (Luo and Helmann, 2009) JP105
JP3;sigX::SpectR This paper, (Cao and Helmann, 2002) JP106
JP4;sigX::SpectR This paper, (Cao and Helmann, 2002) JP107
JP5;sigX::SpectR This paper, (Cao and Helmann, 2002) JP108
JP6;sigX::SpectR This paper, (Cao and Helmann, 2002) JP109
JP7;sigX::SpectR This paper, (Cao and Helmann, 2002) JP110
JP8;sigX::SpectR This paper, (Cao and Helmann, 2002) JP111
JP9;sigX::SpectR This paper, (Cao and Helmann, 2002) JP112
JP3;sigY::KanR This paper, (Cao et al., 2003) JP113
JP4;sigY::KanR This paper, (Cao et al., 2003) JP114
JP5;sigY::KanR This paper, (Cao et al., 2003) JP115
JP6;sigY::KanR This paper, (Cao et al., 2003) JP116
JP7;sigY::KanR This paper, (Cao et al., 2003) JP117
JP8;sigY::KanR This paper, (Cao et al., 2003) JP118
JP9;sigY::KanR This paper, (Cao et al., 2003) JP119
JP7; hag::ErmR This paper, (Koo et al., 2017) JP120
Chemicals, Peptides, and Recombinant Proteins
Mycophenolic Acid MP Biomedicals Cat #194172
Recombinant DNA
Plasmid ECE174, sacA::P?-yfp CmR, where ? can be SigB,D,L,M,W,X,Y target site This paper, (Locke et al., 2011) Plasmid #1 (see STAR Methods)
Plasmid pDL30, amyE::P?-3Xcfp SpectR, where ? can be sigB,D,M,W,X, target site This paper Plasmid #2 (see STAR Methods)
Plasmid pDR-111, amyE::Phyperspank-sigB SpectR This paper Plasmid #3 (see STAR Methods)
Plasmid ECE171, pyrD::PB-cfp kanR This paper Plasmid #4 (see STAR Methods)
Plasmid pDR-111, amyE::Phyperspank-yfp SpectR This paper Plasmid #5 (see STAR Methods)
Software and Algorithms
Custom MATLAB Algorithms for Image Analysis This paper, (Locke et al., 2011)