Table 1.
Strain | Relevant genotype | Source/reference/construction |
---|---|---|
SG20780 | F– Δ(argF‐lac)169 lon510 cpsB10::lac rpsL150 | S Gottesman, NIH, USA |
SG20781 | F– Δ(argF‐lac)169 lon + cpsB10::lac rpsL150 | S Gottesman, NIH, USA |
MG1655 | F– rph‐1 | Laboratory collection |
HR318 | F– λ– rph‐1 btuB::Tn10 rpoB8 | R. Harinarayanan, CDFD, India. |
MGBT10 | The same as MG1655, but has btuB::Tn10 | This study, MG1655 X P1/(HR318) |
MMRT6 | The same as SG20780, but has btuB::Tn10 rpoB12 | This study |
MMRT23 | The same as SG20780, but has btuB::Tn10 rpoB77 | This study |
Phage | Relevant genotype | Source/reference |
---|---|---|
P1 | Vir | Laboratory collection, originally obtained from N Willets, UK |
Name of the plasmid carrying hns variant alleles | Base change(s)/amino acid change present/functional defect(s) reported/reference | Source |
---|---|---|
pLGhns‐P116S |
CCA to TCA Change of proline to serine at 116th amino acid position Shown to be defective in the recognition of curved DNA region, but retains nonspecific DNA binding [19, Ueguchi et al., 1996] |
J Gowrishankar, CDFD, Hyderabad, India |
pLGhns‐∆64 |
ATG to TGC (deletion of A results in a frameshift leading to formation of in‐frame Cys codon and a stop codon). Produces truncated H‐NS protein bearing only first 64 amino acids. Shown to be defective in DNA binding and higher‐order oligomerization [19, Ueguchi et al., 1996] |
J Gowrishankar, CDFD, Hyderabad, India |
pLGhns‐T55P |
ACT to CCT Change of threonine to proline at 55th amino acid position Shown to be defective in higher‐order oligomerization [19, Ueguchi et al., 1996] |
J Gowrishankar, CDFD, Hyderabad, India |
pLGhns‐L26P |
CTG to CCG Change of leucine to proline at 26th amino acid position Shown to be defective in higher‐order oligomerization [19, Ueguchi et al., 1996] |
J Gowrishankar, CDFD, Hyderabad, India |
pLGhns + |
Wild‐type DNA‐binding and oligomerization functions are normal (reviewed by Refs 8, 13) |
J Gowrishankar, CDFD, Hyderabad, India |
All the above‐mentioned plasmids are derivatives of pLG339 (pSC101 replicon, KanR).