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. 2018 Jul 19;10(7):377. doi: 10.3390/v10070377

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© 2018 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Amino acid sequence identity (AAI) distance matrix of the 10 distinct P. larvae phage large terminases (a) and corresponding phylogenetic tree (b). Large terminases are distributed into four phams, with each pham in the phylogenetic tree highlighted in a different color. LT pham 1 (Fern and Harrison clusters, Diane, Hayley, Vadim, Vegas) is highlighted in blue, LT pham 2 (Dragolir, LincolnB, Wanderer) in green, LT pham 3 (Halcyone cluster) in red, and LT pham 4 (Lily) in orange. Phages in LT pham 1 and LT pham 2 (blue and green, respectively) use the 3′ cohesive ends DNA packaging strategy, while phages in the LT pham 3 (red) use the direct terminal repeats strategy, and phage Lily (orange) uses the 5′ cohesive ends strategy.

Amino acid sequence identity (AAI) distance matrix of the 10 distinct P. larvae phage large terminases (a) and corresponding phylogenetic tree (b). Large terminases are distributed into four phams, with each pham in the phylogenetic tree highlighted in a different color. LT pham 1 (Fern and Harrison clusters, Diane, Hayley, Vadim, Vegas) is highlighted in blue, LT pham 2 (Dragolir, LincolnB, Wanderer) in green, LT pham 3 (Halcyone cluster) in red, and LT pham 4 (Lily) in orange. Phages in LT pham 1 and LT pham 2 (blue and green, respectively) use the 3′ cohesive ends DNA packaging strategy, while phages in the LT pham 3 (red) use the direct terminal repeats strategy, and phage Lily (orange) uses the 5′ cohesive ends strategy.