Table 2. Distribution, heterozygosity and linkage disequilibrium (LD, r²) of molecular markers (SNP and DArT), genotyped and analyzed individually for all chromosomes.

Chromosome	Length (Mb)	Marker count			SNP Heterozygosity	Average LD (r2)
		SNP	DArT	Total		SNP	DArT	SNP+DArT
1	52.02	320	286	606	0.98%	0.0378	0.0364	0.0361
2	49.01	458	409	867	0.76%	0.0594	0.0610	0.0594
3	52.18	358	364	722	0.90%	0.0441	0.0371	0.0399
4	45.80	179	260	439	0.86%	0.0615	0.0432	0.0494
5	40.57	251	282	533	0.84%	0.0379	0.0320	0.0338
6	31.95	287	250	537	1.01%	0.0445	0.0430	0.0432
7	51.71	307	299	606	0.83%	0.0405	0.0351	0.0367
8	59.63	318	391	709	0.96%	0.0367	0.0314	0.0331
9	37.42	315	295	610	0.87%	0.0302	0.0276	0.0280
10	43.25	197	261	458	1.03%	0.0321	0.0345	0.0326
11	50.00	244	346	590	0.80%	0.0699	0.0463	0.0539
Total	513.54	3234	3443	6677	0.89%	0.0360	0.0330	0.0312