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. 2018 Apr 26;126(4):047014. doi: 10.1289/EHP2698

Table 1.

Primer pair sequences and amplification characteristics for the amplification of promoter-specific CYP19 expression in Hs578t cells.

CYP19 promoter Primer pairs (5′–3′) Amplification characteristics in Hs578t Tissue-specific expression Reference and NCBI accession number
CYP19-coding region Fw: TGTCTCTTTGTTCTTCATGCTATTTCTC Standard curve: r2=0.991 Detects all aromatase transcripts regardless of promoter utilized Sanderson et al. 2000)
  Rv: TCACCAATAACAGTCTGGATTTCC Efficiency: 92.8%   M22246
CYP19-I.4 Fw: GGCTCCAAGTAGAACGTGACCAACTG Standard curve: r2=0.941 Expressed in fibroblasts in the normal mammary gland Heneweer et al. 2004)
  Rv: CAGCCCAAGTTTGCTGCCGAA Efficiency: 101.9%   S52794
CYP19-PII Fw: TCTGTCCCTTTGATTTCCACAG Standard curve: r2=0.937 Expressed in ovaries, testes and stroma of breast cancer patients Heneweer et al. 2004)
  Rv: GCACGATGCTGGTGATGTTATA Efficiency: 108.9%   S52794
CYP19-I.3 Fw: GGGCTTCCTTGTTTTGACTTGTAA Standard curve: r2=0.969 Expressed in ovaries, testes and stroma of breast cancer patients Wang et al. 2008)
  Rv: AGAGGGGGCAATTTAGAGTCTGTT Efficiency: 95.7%   D30796
CYP19-I.7 Fw: ACACTCAGCTTTTTCCCAACA Standard curve: r2=0.983 Expressed in endothelial cells and stroma of breast cancer patients NM_001347251
  Rv: TTTCACCCCTTTCTCCGGTC Efficiency: 90.7%    

Note: Fw, forward; NCBI, National Center Biotechnology Information; Rv, reverse.