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. 2018 Aug 2;8:11613. doi: 10.1038/s41598-018-30037-0

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© The Author(s) 2018

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Phylogenetic tree of nucleotide sequences of TCRβ J segments of bank vole and mouse. The tree was inferred using the neighbour-joining method. Bootstrap values based on 1000 replicates are shown. The branch lengths are in units of evolutionary distances (the number of base substitutions per site). The full list of mouse reference sequences with accession numbers is available in Supplementary Table S1. Sequences of bank vole genes identified in this study are available in Supplementary File S2; only one allele for each locus is present herein for clarity. Orange circles mark the mouse sequences (TRBJXX*01); red circle and tree branch indicates murine sequence in the open reading frame but with alterations in regulatory elements or splice sites (ORF); and blue circles mark the bank vole sequences (BV_TRBJXX*01). Number after asterisk refer to the allele name.