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Comparison of alignment properties of genes and nucleotide substitution models used in Pleosporales phylogenetic analysis.
| LSU | SSU | rpb2 | tef1 | ITS | tub2 | |
|---|---|---|---|---|---|---|
| Alignment strategy (MAFFT v6) | G-INS-1 | G-INS-1 | G-INS-1 +manual | G-INS-1 +manual | G-INS-1 +manual | G-INS-1 +manual |
| Nucleotide substitution models for Bayesian analysis (determined by MrModeltest) | GTR+I+G | HKY+I+G | GTR+I+G | GTR+I+G | GTR+I+G | GTR+I+G |
