Table 3.
Correlation of significantly differentially expressed proteins with their transcription levels∗.
| Protein ID | Protein log2 FoldChange (P10748/ATCC 29212) | Protein log2 FoldChange (P10748/3138) | Transcript ID | mRNA log2 FoldChange (P10748/ATCC 29212) | mRNA log2 FoldChange (P10748/3138) |
|---|---|---|---|---|---|
| Unigene1578_All | 4.83 | 4.55 | Unigene1578_All | 0 | 0 |
| Unigene952_All | 10.84 | 10.35 | Unigene952_All | 9.15 | 9.15 |
| Unigene1006_All | 8.56 | 6.66 | Unigene1006_All | 7.38 | 7.38 |
| Unigene1155_All | 2.57 | 2.6 | Unigene1155_All | 0 | 0 |
| Unigene1183_All | 5.79 | 6.9 | Unigene1183_All | 8.01 | 8.01 |
| Unigene1529_All | 2.53 | 2.4 | Unigene1529_All | 0 | 0 |
| Unigene1072_All | 2.52 | 1.97 | Unigene1072_All | 0 | 0 |
| Unigene1405_All | 5.56 | 5.62 | Unigene1405_All | 6.29 | 6.29 |
| Unigene969_All | 2.47 | 2.79 | Unigene969_All | 0 | 0 |
| CL28.Contig2_All | 5.32 | 5.2 | CL28.Contig2_All | 14.11 | 14.11 |
| Unigene1481_All | 2.18 | 2.08 | Unigene1481_All | 0 | 0 |
| Unigene1194_All | 4.13 | 5.55 | Unigene1194_All | 9.23 | 9.23 |
| Unigene1568_All | 4.1 | 4.58 | Unigene1568_All | 4.39 | 4.39 |
| Unigene915_All | 3.68 | 4.16 | Unigene915_All | 11.83 | 14.42 |
| Unigene420_All | -0.58 | -1.02 | Unigene420_All | 0 | 0 |
| Unigene976_All | 0.66 | 0.53 | Unigene976_All | 1.1 | 0.98 |
| Unigene478_All | -0.79 | -0.69 | Unigene478_All | 0 | 0 |
| Unigene390_All | 0.58 | 0.62 | Unigene390_All | -5.73 | -5.73 |
| Unigene488_All | -1.01 | -1 | Unigene488_All | 0 | 0 |
| Unigene1531_All | -1.15 | -0.64 | Unigene1531_All | 0 | 0 |
∗Based on RNA-Seq data (Hua et al., 2018). Zero indicates undetectable transcripts for both strains. Pearson correlation coefficient of protein and mRNA expressions between strains P10748 and ATCC 29212 is 0.675, P = 0.001. Pearson correlation coefficient of protein and mRNA expressions between strains P10748 and 3138 is 0.698, P = 0.001.