Table 3.

GO terms for co-expressed mRNAs of lncRNAs TCONS_00013557 and XR_518424.2.

Term a ID	Term Description	Gene Symbols	p-Value	FDR b
GO terms for co-expressed mRNAs of TCONS_00013557
GO:0001502	cartilage condensation	ACAN; COL11A1; COL2A1	1.62 × 10−6	0.000197
GO:0030199	collagen fibril organization	ACAN; COL11A1; COL2A1	1.90 × 10−5	0.001158
GO:0006029	proteoglycan metabolic process	COL11A1; COL2A1	3.35 × 10−5	0.001362
GO:0002062	chondrocyte differentiation	MATN1; COL2A1; OSR2	7.32 × 10−5	0.002015
GO:0060272	embryonic skeletal joint morphogenesis	OSR2; COL2A1	8.26 × 10−5	0.002015
GO:0030198	extracellular matrix organization	COL9A1; COL11A1; IBSP; COL2A1	0.0002075	0.004219
GO:0002063	chondrocyte development	ACAN; COL11A1	0.0003181	0.005543
GO:0035987	endodermal cell differentiation	COL11A1; COL12A1	0.0011231	0.017127
GO:0030574	collagen catabolic process	COL11A1; COL2A1	0.0023463	0.031805
GO:0048704	embryonic skeletal system morphogenesis	COL11A1; OSR2	0.0026094	0.031835
GO:0005578	proteinaceous extracellular matrix	MATN1; COL12A1; COL9A2; LECT1; ACAN; COL9A1; CHAD	3.53 × 10−8	1.06 × 10−6
GO:0005594	collagen type IX trimer	COL9A1; COL9A2	1.49 × 10−5	0.000224
GO:0005788	endoplasmic reticulum lumen	COL9A1; COL11A1; COL2A1	0.0010591	0.010591
GO:0031012	extracellular matrix	COL12A1; IBSP; COL2A1	0.0015573	0.01168
GO:0005859	muscle myosin complex	LOC103348296	0.0044683	0.02681
GO:0005604	basement membrane	ACAN; COL2A1	0.0068787	0.034393
GO:0001739	sex chromatin	SUZ12	0.0096571	0.039576
GO:0005576	extracellular region	PRSS35; COL11A1; COL9A1; IBSP; COL2A1	0.0106248	0.039576
GO:0016461	unconventional myosin complex	LOC103348296	0.0118729	0.039576
GO:0030020	extracellular matrix structural constituent conferring tensile strength	COL9A1; COL2A1	1.45 × 10−5	0.000439
GO:0005201	extracellular matrix structural constituent	MATN1; COL11A1; ACAN	2.37 × 10−5	0.000439
GO:0030674	protein binding, bridging	CRADD; COL11A1	0.0015134	0.018665
GO:0000773	phosphatidyl-N-methylethanolamine N-methyltransferase activity	PEMT	0.0035077	0.021631
GO:0080101	phosphatidyl-N-dimethylethanolamine N-methyltransferase activity	PEMT	0.0035077	0.021631
GO:0004608	phosphatidylethanolamine N-methyltransferase activity	PEMT	0.0035077	0.021631
GO:0033699	DNA 5′-adenosine monophosphate hydrolase activity	APTX	0.0052572	0.023118
GO:0048407	platelet-derived growth factor binding	COL2A1	0.0070038	0.023118
GO:0016918	retinal binding	CRABP1	0.0070038	0.023118
GO:0008429	phosphatidylethanolamine binding	PEMT	0.0070038	0.023118
GO terms for co-expressed mRNAs of XR_518424.2
GO:0007519	skeletal muscle tissue development	VGLL2; CAV1; HOXD10; CAV1	5.64 × 10−6	0.000954
GO:0006641	triglyceride metabolic process	CAV1; PTPN11; CAV1	1.78 × 10−5	0.000954
GO:1901979	regulation of inward rectifier potassium channel activity	CAV1; CAV1	2.25 × 10−5	0.000954
GO:0003057	regulation of the force of heart contraction by chemical signal	CAV1; CAV1	2.25 × 10−5	0.000954
GO:0086098	angiotensin-activated signaling pathway involved in heart process	CAV1; CAV1	2.25 × 10−5	0.000954
GO:0033484	nitric oxide homeostasis	CAV1; CAV1	2.25 × 10−5	0.000954
GO:0001937	negative regulation of endothelial cell proliferation	CAV1; LOC100339409; CAV1	2.69 × 10−5	0.000954
GO:0070836	caveola assembly	CAV1; CAV1	3.00 × 10−5	0.000954
GO:0060056	mammary gland involution	CAV1; CAV1	3.00 × 10−5	0.000954
GO:0019065	receptor-mediated endocytosis of virus by host cell	CAV1; CAV1	3.86 × 10−5	0.000954
GO:0034098	VCP-NPL4-UFD1 AAA ATPase complex	CAV1; CAV1	9.36 × 10−5	0.004681
GO:0002080	acrosomal membrane	CAV1; CAV1	0.001231186	0.03078
GO:0030018	Z disc	FHL3; FHOD3; RA_M006_JSM7BED4F	0.002062968	0.034383
GO:0016504	peptidase activator activity	CAV1; CAV1	0.000356053	0.023856
GO:0071209	U7 snRNA binding	LSM10	0.006180344	0.045963
GO:0034988	Fc-gamma receptor I complex binding	RA_M006_JSM7BED4F	0.006180344	0.045963
GO:0015036	disulfide oxidoreductase activity	TXNL1	0.006180344	0.045963
GO:0043532	angiostatin binding	LOC100339409	0.006180344	0.045963
GO:0005519	cytoskeletal regulatory protein binding	CDC42EP3	0.007206806	0.045963
GO:0042030	ATPase inhibitor activity	LOC100339409	0.007206806	0.045963
GO:0004871	signal transducer activity	TRIM13; RA_M006_JSM7BED4F; TMEM9B	0.007345729	0.045963
GO:0001161	intronic transcription regulatory region sequence-specific DNA binding	BCL6	0.008232242	0.045963
GO:0052731	phosphocholine phosphatase activity	PHOSPHO1	0.008232242	0.045963

^a Term: GO term or pathway term; ^b FDR: false discovery rate.