Table 5. Alpha diversity results of gut microbiota of seabream fed two tested diets.
Number of reads per sample assigned to OTUs, and alpha diversity metrics values (normalized at the lowest sample size: 20,052 reads) of gut microbial community of gilthead sea bream fed CTRL (n = 4) or Sh108 (n = 6) diets for 90 days. Data are expressed as means ± SD. Different letters indicate statistically significant differences between groups (Student’s t-test, P < 0.05).
Diet | Reads | Observed species | Good’s coverage | PD Whole tree | Chao1 | Shannon |
---|---|---|---|---|---|---|
CTRL | 26,828 ± 7,248b | 160 ± 19 | 0.99 ± 0.0 | 13.8 ± 1.0 | 172 ± 19 | 3.3 ± 0.7 |
Sh108 | 47,883 ± 9,482a | 154 ± 24 | 0.99 ± 0.0 | 13.6 ± 1.9 | 172 ± 21 | 2.4 ± 0.7 |
Total number of reads taxonomically classified | 394,611 | |||||
Mean number of reads/sample | 39,461 ± 13,626 | |||||
Total number of OTUs | 259 |