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. 2017 Feb 21;26(9):1770–1784. doi: 10.1093/hmg/ddx062

Table 1.

New associations with lipid traits identified in the East Asian meta-analysis (P < 5 × 10−8)

Trait Variant Chr Position Locus N EA/NEA EAF Adjusted for age, sex
Adjusted for age, sex, BMI
Beta SE P-value Phet Beta SE P-value Phet
TG rs10886863 10 122,929,493 WDR11-FGFR2 45,245 C/T 0.64 0.041 0.007 2.71 × 10−8 0.275 0.041 0.006 2.73 × 10−10 0.175
HDL-C rs10743940 12 7,651,138 CD163-APOBEC1 34,243 A/T 0.30 0.050 0.009 7.00 × 10−9 0.105 0.050 0.008 2.30 × 10−9 0.163
HDL-C rs10504476 8 71,267,629 NCOA2 42,731 G/A 0.60 0.040 0.007 2.11 × 10−7 0.993 0.042 0.007 1.62 × 10−8 0.812
HDL-C rs10144765 14 52,559,930 NID2-PTDGR 54,176 G/C 0.27 0.031 0.007 1.63 × 10−6 0.626 0.035 0.007 4.16 × 10−8 0.380

East Asian meta-analysis results from Phases 1 and 2 (without and with adjustment for BMI). Genome-wide significant association is defined as P < 5 × 10−8. Physical positions based on hg19. Effect alleles are associated with higher triglyceride and HDL-C trait values. Beta estimates reflect per allele effects of variants on inverse normal transformed traits. rs10743940 at CD163-APOBEC1 attained genome-wide significance at Phase 2 (N up to 34,421). The other three loci attained genome-wide significance from combined analysis of Phase 1 discovery, in silico, and de novo stages (N up to 61,607 for HDL-C, and N up to 45,839 for TG).

Chr, chromosome; EA, effect allele; NEA, non-effect allele; EAF, effect allele frequency; SE, standard error; TG, triglycerides; HDL-C, high-density lipoprotein cholesterol.