Table 1. Summary of all accession numbers of the AOX gene family in wheat done via a BLASTN search.
Promoter | Classification | Ensembl Plants Gene ID |
TaAOX1a-2AL | TaAOX1a-2AL.sv1 | TRIAE_CS42_2AL_TGACv1_093624_AA0283900.1 |
TaAOX1a-2AL.sv2 | TRIAE_CS42_2AL_TGACv1_093624_AA0283900.2 | |
TaAOX1a-2BL | TaAOX1a-2BL | TRIAE_CS42_2BL_TGACv1_132767_AA0439680.1 |
TaAOX1a-2DL | TaAOX1a-2DL.sv1 | TRIAE_CS42_2DL_TGACv1_159044_AA0531270.1 |
TaAOX1a-2DL.sv2 | TRIAE_CS42_2DL_TGACv1_159044_AA0531270.2 | |
TaAOX1a-like-2DL | TaAOX1a-like-2DL | TRIAE_CS42_2DL_TGACv1_160367_AA0549780.1 |
regTaAOX-4BL | regTaAOX-4BL.sv1 | TRIAE_CS42_4BL_TGACv1_321481_AA1061160.1 |
regTaAOX-4BL.sv2 | TRIAE_CS42_4BL_TGACv1_321481_AA1061160.2 | |
regTaAOX-4BL.sv3 | TRIAE_CS42_4BL_TGACv1_321481_AA1061160.3 | |
regTaAOX-4BL.sv4 | TRIAE_CS42_4BL_TGACv1_321481_AA1061160.4 | |
put.regTaAOX-3B | put.regTaAOX-3B | TRIAE_CS42_3B_TGACv1_221271_AA0735840 |
put.regTaAOX-6BL | put.regTaAOX-6BL | TRIAE_CS42_6BL_TGACv1_499339_AA1578450 |
TaAOX1c-6AL | TaAOX1c-6AL | TRIAE_CS42_6AL_TGACv1_471250_AA1505530.1 |
TaAOX1c-6BL | TaAOX1c-6BL.sv1 | TRIAE_CS42_6BL_TGACv1_499881_AA1593950.1 |
TaAOX1c-6BL.sv2 | TRIAE_CS42_6BL_TGACv1_499881_AA1593950.2 | |
TaAOX1c-6BL.sv3 | TRIAE_CS42_6BL_TGACv1_499881_AA1593950.3 | |
TaAOX1c-6DL | TaAOX1c-6DL | TRIAE_CS42_6DL_TGACv1_528632_AA1715280.1 |
regTaAOX-3B | regTaAOX-3B | TRIAE_CS42_3B_TGACv1_221946_AA0753740.1 |
put.TaAOX1e-3DS | put.TaAOX1e-3DS | TRIAE_CS42_3DS_TGACv1_271978_AA0912170 |
TaAOX1d-2AL.1 | TaAOX1d-2AL.1 | TRIAE_CS42_2AL_TGACv1_094717_AA0302070.1 |
TaAOX1d-2AL.2 | TaAOX1d-2AL.2.sv1 | TRIAE_CS42_2AL_TGACv1_093545_AA0282360.1 |
TaAOX1d-2AL.2.sv2 | TRIAE_CS42_2AL_TGACv1_093545_AA0282360.2 | |
TaAOX1d-2DL | TaAOX1d-2DL | TRIAE_CS42_2DL_TGACv1_162315_AA0562440.1 |
put.TaAOX1d-like-4AS | put.TaAOX1d-like-4AS | TRIAE_CS42_4AS_TGACv1_308389_AA1027660 |
TuAOX1d.1* | TuAOX1d.1* | TRIUR3_12374 |
TuAOX1d.2* | TuAOX1d.2* | TRIUR3_19476 |
TuAOX1c* | TuAOX1c* | TRIUR3_08189 |
TuAOX1a* | TuAOX1a* | TRIUR3_10307 |
AetAOX1d* | AetAOX1d* | F775_18387 |
AetAOX1d-like* | AetAOX1d-like* | F775_43125 |
AetAOX1e* | AetAOX1e* | F775_11948 |
AetAOX1a* | AetAOX1a* | F775_17784 |
Non-Expressed | ||
Promoter | Classification | Ensembl Plants/IWGSC Fragment Location |
N/A | ne.TaAOX1d-2BL.1 | RC.TGACv1_scaffold_129474_2BL:235,137–236,895 |
N/A | ne.TaAOX1d-2BL.2 | RC.TGACv1_scaffold_129474_2BL:226867–227725 |
N/A | ne.TaAOX1d-2DL | RC.TGACv1_scaffold_160654_2DL:15,057–16,369 |
N/A | ne.TaAOX•-2AL | RC.TGACv1_scaffold_093545_2AL:13252–14775 |
N/A | Ta.Fragment-7BL | TGACv1_scaffold_576971_7BL:58792–58921 |
N/A | Tu.Fragment* | C163670370 1–226 |
N/A | ne.AesAOX1d* | RC.TGAC_WGS_speltoides_v1_contig_403763 |
N/A | ne.AesAOX•* | RC.TGAC_WGS_speltoides_v1_contig_239141 |
N/A | ne.AesAOX•* | TGAC_WGS_speltoides_v1_contig_195745 |
N/A | Fragment* | TGAC_WGS_speltoides_v1_contig_1601667 |
N/A | Fragment* | TGAC_WGS_speltoides_v1_contig_1653744 |
N/A | Fragment* | RC.TGAC_WGS_speltoides_v1_contig_2863348 |
N/A | Aet.Fragment* | RC.C137891329 48–258 |
N/A | Aet.Fragment* | RC.scaffold67708 39107–39328 |
N/A | Aet.Fragment* | RC.scaffold94414 27790–27998 |
RC prefix designates sequences that were reverse-complemented in order to achieve AOX sequence identity.
*Indicates diploid promoters or protein isoforms.