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. 2018 Aug 3;13(8):e0201439. doi: 10.1371/journal.pone.0201439

Table 1. Summary of all accession numbers of the AOX gene family in wheat done via a BLASTN search.

Promoter Classification Ensembl Plants Gene ID
TaAOX1a-2AL TaAOX1a-2AL.sv1 TRIAE_CS42_2AL_TGACv1_093624_AA0283900.1
TaAOX1a-2AL.sv2 TRIAE_CS42_2AL_TGACv1_093624_AA0283900.2
TaAOX1a-2BL TaAOX1a-2BL TRIAE_CS42_2BL_TGACv1_132767_AA0439680.1
TaAOX1a-2DL TaAOX1a-2DL.sv1 TRIAE_CS42_2DL_TGACv1_159044_AA0531270.1
TaAOX1a-2DL.sv2 TRIAE_CS42_2DL_TGACv1_159044_AA0531270.2
TaAOX1a-like-2DL TaAOX1a-like-2DL TRIAE_CS42_2DL_TGACv1_160367_AA0549780.1
regTaAOX-4BL regTaAOX-4BL.sv1 TRIAE_CS42_4BL_TGACv1_321481_AA1061160.1
regTaAOX-4BL.sv2 TRIAE_CS42_4BL_TGACv1_321481_AA1061160.2
regTaAOX-4BL.sv3 TRIAE_CS42_4BL_TGACv1_321481_AA1061160.3
regTaAOX-4BL.sv4 TRIAE_CS42_4BL_TGACv1_321481_AA1061160.4
put.regTaAOX-3B put.regTaAOX-3B TRIAE_CS42_3B_TGACv1_221271_AA0735840
put.regTaAOX-6BL put.regTaAOX-6BL TRIAE_CS42_6BL_TGACv1_499339_AA1578450
TaAOX1c-6AL TaAOX1c-6AL TRIAE_CS42_6AL_TGACv1_471250_AA1505530.1
TaAOX1c-6BL TaAOX1c-6BL.sv1 TRIAE_CS42_6BL_TGACv1_499881_AA1593950.1
TaAOX1c-6BL.sv2 TRIAE_CS42_6BL_TGACv1_499881_AA1593950.2
TaAOX1c-6BL.sv3 TRIAE_CS42_6BL_TGACv1_499881_AA1593950.3
TaAOX1c-6DL TaAOX1c-6DL TRIAE_CS42_6DL_TGACv1_528632_AA1715280.1
regTaAOX-3B regTaAOX-3B TRIAE_CS42_3B_TGACv1_221946_AA0753740.1
put.TaAOX1e-3DS put.TaAOX1e-3DS TRIAE_CS42_3DS_TGACv1_271978_AA0912170
TaAOX1d-2AL.1 TaAOX1d-2AL.1 TRIAE_CS42_2AL_TGACv1_094717_AA0302070.1
TaAOX1d-2AL.2 TaAOX1d-2AL.2.sv1 TRIAE_CS42_2AL_TGACv1_093545_AA0282360.1
TaAOX1d-2AL.2.sv2 TRIAE_CS42_2AL_TGACv1_093545_AA0282360.2
TaAOX1d-2DL TaAOX1d-2DL TRIAE_CS42_2DL_TGACv1_162315_AA0562440.1
put.TaAOX1d-like-4AS put.TaAOX1d-like-4AS TRIAE_CS42_4AS_TGACv1_308389_AA1027660
TuAOX1d.1* TuAOX1d.1* TRIUR3_12374
TuAOX1d.2* TuAOX1d.2* TRIUR3_19476
TuAOX1c* TuAOX1c* TRIUR3_08189
TuAOX1a* TuAOX1a* TRIUR3_10307
AetAOX1d* AetAOX1d* F775_18387
AetAOX1d-like* AetAOX1d-like* F775_43125
AetAOX1e* AetAOX1e* F775_11948
AetAOX1a* AetAOX1a* F775_17784
Non-Expressed
Promoter Classification Ensembl Plants/IWGSC Fragment Location
N/A ne.TaAOX1d-2BL.1 RC.TGACv1_scaffold_129474_2BL:235,137–236,895
N/A ne.TaAOX1d-2BL.2 RC.TGACv1_scaffold_129474_2BL:226867–227725
N/A ne.TaAOX1d-2DL RC.TGACv1_scaffold_160654_2DL:15,057–16,369
N/A ne.TaAOX•-2AL RC.TGACv1_scaffold_093545_2AL:13252–14775
N/A Ta.Fragment-7BL TGACv1_scaffold_576971_7BL:58792–58921
N/A Tu.Fragment* C163670370 1–226
N/A ne.AesAOX1d* RC.TGAC_WGS_speltoides_v1_contig_403763
N/A ne.AesAOX•* RC.TGAC_WGS_speltoides_v1_contig_239141
N/A ne.AesAOX•* TGAC_WGS_speltoides_v1_contig_195745
N/A Fragment* TGAC_WGS_speltoides_v1_contig_1601667
N/A Fragment* TGAC_WGS_speltoides_v1_contig_1653744
N/A Fragment* RC.TGAC_WGS_speltoides_v1_contig_2863348
N/A Aet.Fragment* RC.C137891329 48–258
N/A Aet.Fragment* RC.scaffold67708 39107–39328
N/A Aet.Fragment* RC.scaffold94414 27790–27998

RC prefix designates sequences that were reverse-complemented in order to achieve AOX sequence identity.

*Indicates diploid promoters or protein isoforms.