Table 3. Features of AOX genes in hexaploid and diploid wheat.
Gene Name | Length of Gene (bp) | Transcript Length (bp) | Coding Sequence (bp) | # of Exons | # of Introns | |
---|---|---|---|---|---|---|
Hexaploid | TaAOX1a-2AL.sv1 | 2369 | 1456 | 987 | 4 | 3 |
TaAOX1a-2AL.sv2 | 2369 | 1432 | 963 | 5 | 4 | |
TaAOX1a-2BL | 6169 | 2102 | 1374 | 4 | 3 | |
TaAOX1a-2DL.sv1 | 2419 | 1467 | 1011 | 4 | 3 | |
TaAOX1a-2DL.sv2 | 2419 | 1341 | 885 | 5 | 4 | |
TaAOX1a-like-2DL | 1515 | 1372 | 495 | 2 | 1 | |
regTaAOX-4BL.sv1 | 4284 | 1571 | 327 | 5 | 4 | |
regTaAOX-4BL.sv2 | 4284 | 3158 | 249 | 4 | 3 | |
regTaAOX-4BL.sv3 | 4284 | 3176 | 267 | 4 | 3 | |
regTaAOX-4BL.sv4 | 4284 | 3274 | 327 | 4 | 3 | |
put.regTaAOX-3B | 3652 | 585 | 291 | 3 | 2 | |
put.regTaAOX-6BL | 3833 | 718 | 441 | 3 | 2 | |
TaAOX1c-6AL | 2019 | 1736 | 1194 | 4 | 3 | |
TaAOX1c-6BL.sv1 | 2207 | 1940 | 1296 | 4 | 3 | |
TaAOX1c-6BL.sv2 | 2207 | 1806 | 1239 | 6 | 5 | |
TaAOX1c-6BL.sv3 | 2207 | 1863 | 1296 | 5 | 4 | |
TaAOX1c-6DL | 2075 | 1801 | 1188 | 4 | 3 | |
regTaAOX-3B | 1456 | 1370 | 324 | 2 | 1 | |
put.TaAOX1e-3DS | 18352 | 1142 | 789 | 4 | 3 | |
TaAOX1d-2AL.1 | 1290 | 1180 | 885 | 2 | 1 | |
TaAOX1d-2AL.2.sv1 | 1423 | 1423 | 993 | 1 | 0 | |
TaAOX1d-2AL.2.sv2 | 2395 | 1269 | 993 | 2 | 1 | |
TaAOX1d-2DL | 1405 | 1405 | 981 | 1 | 0 | |
put.TaAOX1d-like-4AS | 1065 | 963 | 552 | 2 | 1 | |
A Genome | TuAOX1a* | 1383 | 615 | 615 | 3 | 2 |
TuAOX1c* | 4469 | 1305 | 1305 | 7 | 6 | |
TuAOX1d.1* | 888 | 888 | 888 | 1 | 0 | |
TuAOX1d.2* | 8777 | 1212 | 1212 | 3 | 2 | |
D Genome | AetAOX1a* | 1379 | 615 | 615 | 3 | 2 |
AetAOX1e* | 2958 | 1098 | 1098 | 5 | 4 | |
AetAOX1d* | 888 | 888 | 888 | 1 | 0 | |
AetAOX1d-like* | 1198 | 870 | 870 | 4 | 3 |
*Denotes diploid wheat AOX genes.