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. Author manuscript; available in PMC: 2018 Dec 5.
Published in final edited form as: Biochemistry. 2017 Nov 21;56(48):6343–6354. doi: 10.1021/acs.biochem.7b00970

Table 1:

KDs and |Δωmax| determined from 2D HSQC titrations for 15N labeled PAR3GFD and PAR3GEL bound to human Prothrombin and Thrombin (wildtype and mutant). For these NMR titrations, the peptide ligand concentrations were kept constant and the protein concentrations were serially diluted. Estimated KDs were calculated using in house scripts written in Python. Experimental data employed in the calculations include the individual protein and peptide concentrations and also the 15N-NMR chemical shift differences between each set of free and bound conditions. The plasma derived ProT and IIa titration series were carried out at least in triplicate. The studies with recombinant R77aA-IIa were done in duplicate. Error analysis was carried out using a Monte-Carlo approach assuming a 10% error in the serially diluted protein samples. See Materials and Methods for more details.

Peptide Residue ProT |Δωmax|
(ppm)
Wild Type
PPACK-IIa
|Δωmax|
(ppm)
R77aA
PPACK-IIa
PAR3GFD F47 64 ± 8 μM 0.23 ±0.01 40 ± 10 μM 1.98± 0.2 173 ± 85 μM
PAR3GFD D54 65 ± 12
μΜ
0.39 ±0.03 Too tight to
calculate
Insufficient
data points
168 ± 88 μM
PAR3GEL L52 124 ±
27μM
0.37 ±0.04 47 ± 6 μM 1.84± 0.08 salt bridge
not involved
PAR3GEL E48 >200 μM ΝΑ Too tight to
calculate
Insufficient
data points
salt bridge
not involved